Evidence map›Paper›PMID 25373699›Full record

Trial reportHuman genetics2015

Effects of enamel matrix genes on dental caries are moderated by fluoride exposures.

John R Shaffer, Jenna C Carlson, Brooklyn O C Stanley, Eleanor Feingold, Margaret Cooper, Michael M Vanyukov, Brion S Maher, Rebecca L Slayton, Marcia C Willing, Steven E Reis and 6 more

Open access · greenAbstract readClinical TrialMulticenter Study
In one paragraph

Trial report in Human genetics, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 2 pooled it
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 2 syntheses or guidelines pooled it, 46 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Article
  4. Article
  5. AMELX gene association to early childhood caries in south-Indian children: a case-control study.European archives of paediatric dentistry : official journal of the European Academy of Paediatric Dentistry · 2024
    Article
  6. [Overexpression of tuftelin and KLF-5 and its clinicopathological features in hepatitis B virus-related hepatocellular carcinoma].Zhonghua gan zang bing za zhi = Zhonghua ganzangbing zazhi = Chinese journal of hepatology · 2024
    Article
  7. In silico screening of non-synonymous SNPs in human TUFT1 gene.Journal, genetic engineering & biotechnology · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. ENAM Gene Variation in Students Exposed to Different Fluoride Concentrations.International journal of environmental research and public health · 2020
    Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Exploring the genomic basis of early childhood caries: a pilot study.International journal of paediatric dentistry · 2018
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 1 country.

John R ShafferDepartment of Human Genetics, Graduate School of Public Health, University of Pittsburgh, 130 De Soto Street, A300 Crabtree Hall, Pittsburgh, PA, 15261, USA, jrs51@pitt.edu.
Jenna C Carlson
Brooklyn O C Stanley
Eleanor Feingold
Margaret Cooper
Michael M Vanyukov
Brion S Maher
Rebecca L Slayton
Marcia C Willing
Steven E Reis
Daniel W McNeil
Richard J Crout
Robert J Weyant
Steven M Levy
Alexandre R Vieira
Mary L Marazita
University of Pittsburgh · USWest Virginia University · USJohns Hopkins University · USUniversity of Iowa · USUniversity of Washington · USVanderbilt University · US

Funding

Psychosocial Influences on Rural Children's Oral HealthR01DE014899 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI FOXMAN, BETSY, MARAZITA, MARY L. · 2002 to 2020
$39.9M
TRANSLATION MODULEP50DA005605 · NIDA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI TARTER, RALPH E · 1989 to 2014
$25.7M
Fluoride & Other Factors in Childhood and Adolescent Bone DevelopmentR01DE012101 · NIDCR · UNIVERSITY OF IOWA · PI LEVY, STEVEN M. · 1998 to 2013
$11.9M
LONGITUDINAL STUDY OF FLUORIDE EXPOSURES &FLUORIDER01DE009551 · NIDCR · UNIVERSITY OF IOWA · PI LEVY, STEVEN M. · 1991 to 2008
$4.7M
Genetics of CariesR01DE018914 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI VIEIRA, ALEXANDRE REZENDE · 2009 to 2013
$2.2M
Substance Use Disorder Liability: Candidate Gene SystemR01DA019157 · NIDA · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI VANYUKOV, MICHAEL M · 2004 to 2008
$2.2M
Dental Caries: Whole Genome Association and Gene x Environment StudiesU01DE018903 · NIDCR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI MARAZITA, MARY L. · 2007 to 2010
$1.2M
NIDA NIH HHS P50 DA005605NIDA NIH HHS P50-DA005605NIDA NIH HHS R01 DA019157NIDA NIH HHS R01-DA019157NIDCR NIH HHS R01 DE009551NIDCR NIH HHS R01-DE009551NIDCR NIH HHS R01 DE012101NIDCR NIH HHS R01-DE012101NIDCR NIH HHS R01 DE014899NIDCR NIH HHS R01-DE014899NIDCR NIH HHS R01 DE018914NIDCR NIH HHS R01-DE018914NIDCR NIH HHS U01 DE018903NIDCR NIH HHS U01-DE018903
6 · The paper itself

Abstract

Dental caries (tooth decay) is the most common chronic disease, worldwide, affecting most children and adults. Though dental caries is highly heritable, few caries-related genes have been discovered. We investigated whether 18 genetic variants in the group of non-amelogenin enamel matrix genes (AMBN, ENAM, TUFT1, and TFIP11) were associated with dental caries experience in 13 age- and race-stratified samples from six parent studies (N = 3,600). Linear regression was used to model genetic associations and test gene-by-fluoride interaction effects for two sources of fluoride: daily tooth brushing and home water fluoride concentration. Meta-analysis was used to combine results across five child and eight adult samples. We observed the statistically significant association of rs2337359 upstream of TUFT1 with dental caries experience via meta-analysis across adult samples (p < 0.002) and the suggestive association for multiple variants in TFIP11 across child samples (p < 0.05). Moreover, we discovered two genetic variants (rs2337359 upstream of TUFT1 and missense rs7439186 in AMBN) involved in gene-by-fluoride interactions. For each interaction, participants with the risk allele/genotype exhibited greater dental caries experience only if they were not exposed to the source of fluoride. Altogether, these results confirm that variation in enamel matrix genes contributes to individual differences in dental caries liability, and demonstrate that the effects of these genes may be moderated by protective fluoride exposures. In short, genes may exert greater influence on dental caries in unprotected environments, or equivalently, the protective effects of fluoride may obviate the effects of genetic risk alleles.

Indexed as

Dental EnamelFluoridesGene-Environment InteractionMutation, MissenseAdolescentAdultAgedAllelesChildChild, PreschoolDental CariesExtracellular MatrixFemaleGenotypeHumansMaleFluorides

Identifiers

PMID25373699
PMCPMC4293346
OpenAlexW2056906503

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.