Evidence map›Paper›PMID 25373421›Full record

ArticleBMC genomics2014

De-novo assembly of mango fruit peel transcriptome reveals mechanisms of mango response to hot water treatment.

Neta Luria, Noa Sela, Mor Yaari, Oleg Feygenberg, Ilana Kobiler, Amnon Lers, Dov Prusky

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 82 citations in OpenAlex.

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  5. Molecular Insights into Abiotic Stresses in Mango.Plants (Basel, Switzerland) · 2023
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  16. Genetic Map of Mango: A Tool for Mango Breeding.Frontiers in plant science · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Neta Luria
Noa Sela
Mor Yaari
Oleg Feygenberg
Ilana Kobiler
Amnon Lers
Dov PruskyDepartment of Postharvest Science of Fresh Produce, ARO, the Volcani Center, Bet Dagan 50250, Israel. dovprusk@volcani.agri.gov.il.
Agricultural Research Organization · IL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe mango belongs to the genus Mangifera, consisting of numerous tropical fruiting trees in the flowering plant family, Anacardiaceae. Postharvest treatment by hot water brushing (HWB) for 15-20 s was introduced commercially to improve fruit quality and reduce postharvest disease. This treatment enabled successful storage for 3-4 weeks at 12°C, with improved color and reduced disease development, but it enhanced lenticel discoloration on the fruit peel. We investigated global gene expression induced in fruit peel by HWB treatment, and identified key genes involved in mechanisms potentially associated with fruit resistance to pathogens, peel color improvement, and development of lenticel discoloration; this might explain the fruit's phenotypic responses.

resultsThe mango transcriptome assembly was created and characterized by application of RNA-seq to fruit-peel samples. RNA-seq-based gene-expression profiling identified three main groups of genes associated with HWB treatment: 1) genes involved with biotic and abiotic stress responses and pathogen-defense mechanisms, which were highly expressed; 2) genes associated with chlorophyll degradation and photosynthesis, which showed transient and low expression; and 3) genes involved with sugar and flavonoid metabolism, which were highly expressed.

conclusionsWe describe a new transcriptome of mango fruit peel of cultivar Shelly. The existence of three main groups of genes that were differentially expressed following HWB treatment suggests a molecular basis for the biochemical and physiological consequences of the postharvest HWB treatment, including resistance to pathogens, improved color development, and occurrence of lenticel discoloration.

Indexed as

Hot TemperatureAlternariaDatabases, GeneticDisease ResistanceFlavonoidsFruitGene Expression ProfilingGene Expression Regulation, PlantGene OntologyGenes, PlantMangiferaMolecular Sequence AnnotationMolecular Sequence DataMultigene FamilyPigmentationPlant DiseasesFlavonoidsRNA, MessengerWater

Identifiers

PMID25373421
PMCPMC4236434
OpenAlexW2008033406

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.