Evidence map›Paper›PMID 25372680›Full record

ArticleActa crystallographica. Section D, Biological crystallography2014

Temperature-dependent radiation sensitivity and order of 70S ribosome crystals.

Matthew Warkentin, Jesse B Hopkins, Jonah B Haber, Gregor Blaha, Robert E Thorne

Abstract read
In one paragraph

Article in Acta crystallographica. Section D, Biological crystallography, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

  1. Extending the reach of single-particle cryoEM.Current opinion in structural biology · 2025
    Review
  2. Reducing the effects of radiation damage in cryo-EM using liquid helium temperatures.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Article
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  8. Cryo-EM with sub-1 Å specimen movement.Science (New York, N.Y.) · 2020
    Article
  9. Radiation damage and dose limits in serial synchrotron crystallography at cryo- and room temperatures.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  10. Article
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  14. Article
  15. Atomic structure of granulin determined from native nanocrystalline granulovirus using an X-ray free-electron laser.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  16. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Matthew WarkentinPhysics Department, Cornell University, Ithaca, NY 14853, USA.
Jesse B HopkinsPhysics Department, Cornell University, Ithaca, NY 14853, USA.
Jonah B HaberPhysics Department, Cornell University, Ithaca, NY 14853, USA.
Gregor BlahaDepartment of Biochemistry, University of California, Riverside, CA 92521, USA.
Robert E ThornePhysics Department, Cornell University, Ithaca, NY 14853, USA.

Funding

X-RAY ANALYSIS OF PROTEIN STRUCTURE AND FUNCTIONP01GM022778 · NIGMS · YALE UNIVERSITY · PI BREAKER, RONALD R · 1985 to 2019
$26.1M
New Approaches to Radiation Damage and CryoprotectionR01GM065981 · NIGMS · CORNELL UNIVERSITY ITHACA · PI THORNE, ROBERT E. · 2002 to 2010
$1.8M
NIGMS NIH HHS P01 GM022778NIGMS NIH HHS R01 GM065981NIGMS NIH HHS R01GM065981
6 · The paper itself

Abstract

All evidence to date indicates that at T = 100 K all protein crystals exhibit comparable sensitivity to X-ray damage when quantified using global metrics such as change in scaling B factor or integrated intensity versus dose. This is consistent with observations in cryo-electron microscopy, and results because nearly all diffusive motions of protein and solvent, including motions induced by radiation damage, are frozen out. But how do the sensitivities of different proteins compare at room temperature, where radiation-induced radicals are free to diffuse and protein and lattice structures are free to relax in response to local damage? It might be expected that a large complex with extensive conformational degrees of freedom would be more radiation sensitive than a small, compact globular protein. As a test case, the radiation sensitivity of 70S ribosome crystals has been examined. At T = 100 and 300 K, the half doses are 64 MGy (at 3 Å resolution) and 150 kGy (at 5 Å resolution), respectively. The maximum tolerable dose in a crystallography experiment depends upon the initial or desired resolution. When differences in initial data-set resolution are accounted for, the former half dose is roughly consistent with that for model proteins, and the 100/300 K half-dose ratio is roughly a factor of ten larger. 70S ribosome crystals exhibit substantially increased resolution at 100 K relative to 300 K owing to cooling-induced ordering and not to reduced radiation sensitivity and slower radiation damage.

Indexed as

CrystallizationCrystallography, X-RayRadiation ToleranceRibosomesTemperatureThermus thermophilusX-Rayscrystallographyradiation damageribosometemperature dependence

Identifiers

PMID25372680
PMCPMC4220972

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.