Evidence map›Paper›PMID 25372676›Full record

ArticleActa crystallographica. Section D, Biological crystallography2014

The structural basis of urea-induced protein unfolding in β-catenin.

Chao Wang, Zhongzhou Chen, Xia Hong, Fangkun Ning, Haolin Liu, Jianye Zang, Xiaoxue Yan, Jennifer Kemp, Catherine A Musselman, Tatinna G Kutateladze and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Acta crystallographica. Section D, Biological crystallography, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.1field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Hydrogen bonds are a primary driving force for de novo protein folding.Acta crystallographica. Section D, Structural biology · 2017
    Article
  6. Article
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Chao WangThe Integrated Department of Immunology, National Jewish Health, Denver, CO 80206, USA.
Zhongzhou ChenThe Integrated Department of Immunology, National Jewish Health, Denver, CO 80206, USA.
Xia HongThe Integrated Department of Immunology, National Jewish Health, Denver, CO 80206, USA.
Fangkun NingThe Integrated Department of Immunology, National Jewish Health, Denver, CO 80206, USA.
Haolin LiuThe Integrated Department of Immunology, National Jewish Health, Denver, CO 80206, USA.
Jianye ZangThe Integrated Department of Immunology, National Jewish Health, Denver, CO 80206, USA.
Xiaoxue YanThe Integrated Department of Immunology, National Jewish Health, Denver, CO 80206, USA.
Jennifer KempThe Integrated Department of Immunology, National Jewish Health, Denver, CO 80206, USA.
Catherine A MusselmanDepartment of Pharmacology, Anschutz Medical Campus, University of Colorado, Aurora, CO 80045, USA.
Tatinna G KutateladzeDepartment of Pharmacology, Anschutz Medical Campus, University of Colorado, Aurora, CO 80045, USA.
Rui ZhaoDepartment of Biochemistry and Molecular Genetics, Anschutz Medical Campus, University of Colorado, Aurora, CO 80045, USA.
Chengyu JiangChinese Academy of Medical Sciences, Department of Biochemistry and Molecular Biology, Peking Union Medical College, Tsinghua University, Beijing 100005, People's Republic of China.
Gongyi ZhangThe Integrated Department of Immunology, National Jewish Health, Denver, CO 80206, USA.
University of Colorado Denver · USNational Jewish Health · USUniversity of Colorado Anschutz Medical Campus · USChinese Academy of Medical Sciences & Peking Union Medical College · CN

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
THE REGULATION OF V ALPHA 7 EXPRESSING T CELLSP01AI022295 · NIAID · NATIONAL JEWISH HEALTH · PI REFAELI, YOSEF · 1985 to 2011
$11.7M
Molecular Mechanisms of Immune ToleranceT32AI074491 · NIAID · NATIONAL JEWISH HEALTH · PI CAMBIER, JOHN C, PELANDA, ROBERTA · 2009 to 2023
$4.1M
Structure and Function of JmjC Histone DemethylasesR01GM080719 · NIGMS · NATIONAL JEWISH HEALTH · PI ZHANG, GONGYI · 2007 to 2010
$1.2M
Howard Hughes Medical InstituteNCI NIH HHS P30 CA046934NIAID NIH HHS AI22295NIAID NIH HHS P01 AI022295NIGMS NIH HHS GM80719NIGMS NIH HHS R01 GM080719
6 · The paper itself

Abstract

Although urea and guanidine hydrochloride are commonly used to denature proteins, the molecular underpinnings of this process have remained unclear for a century. To address this question, crystal structures of β-catenin were determined at various urea concentrations. These structures contained at least 105 unique positions that were occupied by urea molecules, each of which interacted with the protein primarily via hydrogen bonds. Hydrogen-bond competition experiments showed that the denaturing effects of urea were neutralized when polyethylene glycol was added to the solution. These data suggest that urea primarily causes proteins to unfold by competing and disrupting hydrogen bonds in proteins. Moreover, circular-dichroism spectra and nuclear magnetic resonance (NMR) analysis revealed that a similar mechanism caused protein denaturation in the absence of urea at pH levels greater than 12. Taken together, the results led to the conclusion that the disruption of hydrogen bonds is a general mechanism of unfolding induced by urea, high pH and potentially other denaturing agents such as guanidine hydrochloride. Traditionally, the disruption of hydrophobic interactions instead of hydrogen bonds has been thought to be the most important cause of protein denaturation.

Indexed as

Protein UnfoldingAnimalsbeta CateninCircular DichroismCrystallography, X-RayHydrogen BondingMiceModels, MolecularNuclear Magnetic Resonance, BiomolecularProtein ConformationProtein DenaturationUreaWaterbeta CateninUreaWaterhydrogen bondsureaβ-catenin

Identifiers

PMID25372676
PMCPMC4220971
OpenAlexW2000840536

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.