Evidence map›Paper›PMID 25371763›Full record

ArticleJournal of genomics2014

De novo Assembly and Analysis of the Northern Leopard Frog Rana pipiens Transcriptome.

Matthew K Christenson, Andrew J Trease, Lakshmi-Prasad Potluri, Andrew J Jezewski, Vincent M Davis, Lindsey A Knight, Alan S Kolok, Paul H Davis

Abstract read
In one paragraph

Article in Journal of genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Effects of aqueous extract of Arctium lappa L. roots on serum lipid metabolism.The Journal of international medical research · 2018
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Matthew K Christenson1. Department of Biology, University of Nebraska at Omaha, Omaha, Nebraska 68182, USA;
Andrew J Trease1. Department of Biology, University of Nebraska at Omaha, Omaha, Nebraska 68182, USA;
Lakshmi-Prasad Potluri1. Department of Biology, University of Nebraska at Omaha, Omaha, Nebraska 68182, USA;
Andrew J Jezewski1. Department of Biology, University of Nebraska at Omaha, Omaha, Nebraska 68182, USA;
Vincent M Davis2. Heteroskedastic, Inc., Arvada, Colorado 80403, USA;
Lindsey A Knight1. Department of Biology, University of Nebraska at Omaha, Omaha, Nebraska 68182, USA;
Alan S Kolok1. Department of Biology, University of Nebraska at Omaha, Omaha, Nebraska 68182, USA; ; 3. Center for Environmental Health and Toxicology, University of Nebraska Medical Center, Omaha, Nebraska 68198, USA;
Paul H Davis1. Department of Biology, University of Nebraska at Omaha, Omaha, Nebraska 68182, USA; ; 4. Department of Genetics, Cell Biology and Anatomy, University of Nebraska Medical Center, Omaha, Nebraska 68198, USA.

Funding

UNMC Structural Biology CoreP20GM103427 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI Heather Colleen Jensen-Smith · 2012 to 2026
$59.2M
TRANSGENIC EXPRESSION ANALYSIS OF MIRNA-144P20RR018788 · NCRR · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI WESTON, MICHAEL D · 2003 to 2011
$16.5M
The Molecular Biology of Neurosurgery SystemsP20GM103471 · NIGMS · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI SMITH, SHELLEY D · 2012 to 2013
$4.1M
UNMC SIG Supporting Next-generation DNA Sequencing TechnologyS10RR027754 · NCRR · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI EUDY, JAMES · 2010 to 2010
$500k
NCRR NIH HHS P20 RR018788NCRR NIH HHS S10 RR027754NIGMS NIH HHS P20 GM103427NIGMS NIH HHS P20 GM103471
6 · The paper itself

Abstract

The northern leopard frog Rana (Lithobates) pipiens is an important animal model, being used extensively in cancer, neurology, physiology, and biomechanical studies. R. pipiens is a native North American frog whose range extends from northern Canada to southwest United States, but over the past few decades its populations have declined significantly and is now considered uncommon in large portions of the United States and Canada. To aid in the study and conservation of R. pipiens, this paper describes the first R. pipiens transcriptome. The R. pipiens transcriptome was annotated using Gene Ontology (GO), Kyoto Encyclopedia of Genes and Genomes (KEGG), and Eukaryotic Orthologous Groups (KOG). Differential expression analysis revealed universal and tissue specific genes, and endocrine-related genes were identified. Transcriptome assemblies and other sequence data are available for download.

Indexed as

Northern Leopard FrogRana pipiensTranscriptome.

Identifiers

PMID25371763
PMCPMC4218947

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.