Evidence map›Paper›PMID 25370491›Full record

ArticlemBio2014

Evolution of invasion in a diverse set of Fusobacterium species.

Abigail Manson McGuire, Kyla Cochrane, Allison D Griggs, Brian J Haas, Thomas Abeel, Qiandong Zeng, Justin B Nice, Hanlon MacDonald, Bruce W Birren, Bryan W Berger and 2 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in mBio, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed, 1 pooled it
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 1 synthesis or guideline pooled it, 118 citations in OpenAlex.

  1. World journal of gastroenterology · 2017
    Pooled it
  2. Trial
  3. The role of adhesins ofGut microbes · 2026
    Review
  4. Review
  5. Review
  6. [The Oral Microbiome: Maintenance of Homeostasis, Disease Associations, and Mechanisms of Pathogenesis].Sichuan da xue xue bao. Yi xue ban = Journal of Sichuan University. Medical science edition · 2026
    Review
  7. Review
  8. Article
  9. Article
  10. Article
  11. Metaplasia Enables Stomach Colonization bybioRxiv : the preprint server for biology · 2025
    Article
  12. Article
  13. Gut microbes · 2025
    Article
  14. Article
  15. MedComm · 2025
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 3 countries.

Abigail Manson McGuireBroad Institute, Cambridge, Massachusetts, USA.
Kyla CochraneDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.
Allison D GriggsBroad Institute, Cambridge, Massachusetts, USA.
Brian J HaasBroad Institute, Cambridge, Massachusetts, USA.
Thomas Abeel
Qiandong ZengBroad Institute, Cambridge, Massachusetts, USA.
Justin B NiceProgram in Bioengineering, Lehigh University, Bethlehem, Pennsylvania, USA.
Hanlon MacDonaldProgram in Bioengineering, Lehigh University, Bethlehem, Pennsylvania, USA.
Bruce W BirrenBroad Institute, Cambridge, Massachusetts, USA.
Bryan W Berger
Emma Allen-VercoeDepartment of Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, Canada.
Ashlee M EarlBroad Institute, Cambridge, Massachusetts, USA aearl@broadinstitute.org.
Broad Institute · USLehigh University · USUniversity of Guelph · CA

Funding

Viral Genomics: evolution, spread, and host interactionsU19AI110818 · NIAID · BROAD INSTITUTE, INC. · PI CUOMO, CHRISTINA A · 2014 to 2024
$66.5M
Defining the Human MicrobiomeU54HG004969 · NHGRI · BROAD INSTITUTE, INC. · PI BIRREN, BRUCE W. · 2009 to 2012
$10.3M
NHGRI NIH HHS U54 HG004969NHGRI NIH HHS U54-HG004969NIAID NIH HHS HHSN272200900018CNIAID NIH HHS U19 AI110818PHS HHS HHSN272200900018C
6 · The paper itself

Abstract

unlabelledThe diverse Fusobacterium genus contains species implicated in multiple clinical pathologies, including periodontal disease, preterm birth, and colorectal cancer. The lack of genetic tools for manipulating these organisms leaves us with little understanding of the genes responsible for adherence to and invasion of host cells. Actively invading Fusobacterium species can enter host cells independently, whereas passively invading species need additional factors, such as compromise of mucosal integrity or coinfection with other microbes. We applied whole-genome sequencing and comparative analysis to study the evolution of active and passive invasion strategies and to infer factors associated with active forms of host cell invasion. The evolution of active invasion appears to have followed an adaptive radiation in which two of the three fusobacterial lineages acquired new genes and underwent expansions of ancestral genes that enable active forms of host cell invasion. Compared to passive invaders, active invaders have much larger genomes, encode FadA-related adhesins, and possess twice as many genes encoding membrane-related proteins, including a large expansion of surface-associated proteins containing the MORN2 domain of unknown function. We predict a role for proteins containing MORN2 domains in adhesion and active invasion. In the largest and most comprehensive comparison of sequenced Fusobacterium species to date, we have generated a testable model for the molecular pathogenesis of Fusobacterium infection and illuminate new therapeutic or diagnostic strategies. IMPORTANCE: Fusobacterium species have recently been implicated in a broad spectrum of human pathologies, including Crohn's disease, ulcerative colitis, preterm birth, and colorectal cancer. Largely due to the genetic intractability of member species, the mechanisms by which Fusobacterium causes these pathologies are not well understood, although adherence to and active invasion of host cells appear important. We examined whole-genome sequence data from a diverse set of Fusobacterium species to identify genetic determinants of active forms of host cell invasion. Our analyses revealed that actively invading Fusobacterium species have larger genomes than passively invading species and possess a specific complement of genes-including a class of genes of unknown function that we predict evolved to enable host cell adherence and invasion. This study provides an important framework for future studies on the role of Fusobacterium in pathologies such as colorectal cancer.

Indexed as

Bacterial AdhesionEndocytosisGenes, BacterialGenome, BacterialEvolution, MolecularFusobacteriumSequence Analysis, DNAVirulenceVirulence FactorsVirulence Factors

Identifiers

PMID25370491
PMCPMC4222103
OpenAlexW2146168891

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.