Evidence map›Paper›PMID 25369991›Full record

ArticleDevelopmental dynamics : an official publication of the American Association of Anatomists2015

microRNA-dependent temporal gene expression in the ureteric bud epithelium during mammalian kidney development.

Vidya K Nagalakshmi, Volkhard Lindner, Andy Wessels, Jing Yu

Open access · bronzeAbstract read
In one paragraph

Article in Developmental dynamics : an official publication of the American Association of Anatomists, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.4field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 10 citations in OpenAlex.

  1. Review
  2. Article
  3. Epigenetic regulation of kidney progenitor cells.Stem cells translational medicine · 2020
    Review
  4. Review
  5. Therapeutic microRNAs in polycystic kidney disease.Current opinion in nephrology and hypertension · 2017
    Review
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Vidya K NagalakshmiDepartment of Cell Biology and Child Health Research Center, University of Virginia School of Medicine, Charlottesville, Virginia.
Volkhard Lindner
Andy Wessels
Jing Yu
University of Virginia · USMaine Medical Center Research Institute · USMedical University of South Carolina · US

Funding

SOUTH CAROLINA CLINICAL & TRANSLATIONAL RESEARCH INSTITUTE (SCTR)UL1RR029882 · NCRR · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI BRADY, KATHLEEN T. · 2009 to 2011
$10.1M
South Carolina Clinical & Translational Research Institute (SCTR)UL1TR000062 · NCATS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI BRADY, KATHLEEN T. · 2012 to 2014
$9.4M
SC COBRE for Developmentally Based Cardiovascular DiseasesP30GM103342 · NIGMS · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI ARGRAVES, WILLIAM SCOTT · 2012 to 2016
$5.5M
MUCOPOLYSACCHRIDE METABOLISM IN CARDIAC ANOMALIESR01HL033756 · NHLBI · MEDICAL UNIVERSITY OF SOUTH CAROLINA · PI MARKWALD, ROGER R · 1985 to 2015
$4.8M
Molecular and Cellular Regulation of Mammalian Renal Medulla DevelopmentR01DK085080 · NIDDK · UNIVERSITY OF VIRGINIA · PI YU, JING · 2010 to 2014
$1.7M
NCATS NIH HHS UL1 TR000062NCATS NIH HHS UL1TR000062NCRR NIH HHS UL1 RR029882NCRR NIH HHS UL1RR029882NHLBI NIH HHS R01 HL033756NHLBI NIH HHS R01HL033756-30NIDDK NIH HHS R01 DK085080NIDDK NIH HHS R01DK085080NIGMS NIH HHS P30 GM103342NIGMS NIH HHS P30 GM103342-01
6 · The paper itself

Abstract

backgroundOur previous study on mouse mutants with the ureteric bud (UB) epithelium-specific Dicer deletion (Dicer UB mutants) demonstrated the significance of UB epithelium-derived miRNAs in UB development.

resultsOur whole-genome transcriptional profiling showed that the Dicer mutant UB epithelium abnormally retained transcriptional features of the early UB epithelium and failed to express many genes associated with collecting duct differentiation. Furthermore, we identified a temporal expression pattern of early UB genes during UB epithelium development in which gene expression was detected at early developmental stages and became undetectable by embryonic day 14.5. In contrast, expression of early UB genes persisted at later stages in the Dicer mutant UB epithelium and increased at early stages. Our bioinformatic analysis of the abnormally persistently expressed early genes in the Dicer mutant UB epithelium showed significant enrichment of the let-7 family miRNA targets. We further identified a temporal expression pattern of let-7 miRNAs in the UB epithelium that is anti-parallel to that of some early UB genes during kidney development.

conclusionsWe propose a model in which the let-7 family miRNAs silence the expression of a subset of early genes in the UB epithelium at later developmental stages to promote collecting duct differentiation. Developmental Dynamics 244:444-456, 2015. © 2014 Wiley Periodicals, Inc.

Indexed as

AnimalsCell DifferentiationGene Expression Regulation, DevelopmentalKidney Tubules, CollectingMiceMice, KnockoutMicroRNAsTranscriptomeUrotheliumMicroRNAsmirnlet7 microRNA, mousecollecting duct differentiationlet-7miRNAsmouse

Identifiers

PMID25369991
PMCPMC4344905
OpenAlexW1940829406

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.