Evidence map›Paper›PMID 25369933›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Long-range enhancer activity determines Myc sensitivity to Notch inhibitors in T cell leukemia.

Yumi Yashiro-Ohtani, Hongfang Wang, Chongzhi Zang, Kelly L Arnett, Will Bailis, Yugong Ho, Birgit Knoechel, Claudia Lanauze, Lumena Louis, Katherine S Forsyth and 10 more

Open access · bronzeAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 123 papers.

0numbers the graph read from it
0cells of the map it votes in
123citing papers in PubMed
7.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

123 citing papers in PubMed, 172 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Oncogenic Enhancers in Leukemia.Blood cancer discovery · 2024
    Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Review
  17. Article
  18. Review
  19. Notch Partners in the Long Journey of T-ALL Pathogenesis.International journal of molecular sciences · 2023
    Review
  20. Article

63 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 8 institutions in 4 countries.

Yumi Yashiro-OhtaniAbramson Family Cancer Research Institute, Department of Pathology and Laboratory Medicine, and.
Hongfang WangDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115;
Chongzhi ZangDepartments of Biostatistics and Computational Biology and.
Kelly L ArnettDepartment of Biological Chemistry and Molecular Pharmacology.
Will BailisAbramson Family Cancer Research Institute, Department of Pathology and Laboratory Medicine, and.
Yugong HoDepartment of Genetics, and.
Birgit KnoechelBoston Children's Hospital, Harvard Medical School, Boston, MA 02115;
Claudia LanauzeAbramson Family Cancer Research Institute, Department of Pathology and Laboratory Medicine, and.
Lumena LouisAbramson Family Cancer Research Institute, Department of Pathology and Laboratory Medicine, and.
Katherine S ForsythAbramson Family Cancer Research Institute, Department of Pathology and Laboratory Medicine, and.
Sujun ChenDepartment of Bioinformatics, School of Life Science and Technology, Tongji University, Shanghai, China 200092.
Yoonjie ChungAbramson Family Cancer Research Institute, Department of Pathology and Laboratory Medicine, and.
Jonathan SchugDepartment of Genetics, and.
Gerd A BlobelChildren's Hospital of Philadelphia, University of Pennsylvania, Philadelphia, PA 19104;
Stephen A LiebhaberDepartment of Genetics, and.
Bradley E BernsteinBroad Institute and Department of Pathology, Massachusetts General Hospital, Harvard Medical School, Boston, MA 02115;
Stephen C BlacklowDepartment of Biological Chemistry and Molecular Pharmacology, Cancer Biology, Dana-Farber Cancer Institute, Boston, MA 02115; and.
Xiaole Shirley LiuDepartments of Biostatistics and Computational Biology and.
Jon C AsterDepartment of Pathology, Brigham and Women's Hospital, Harvard Medical School, Boston, MA 02115; wpear@mail.med.upenn.edu jaster@partners.org.
Warren S PearAbramson Family Cancer Research Institute, Department of Pathology and Laboratory Medicine, and wpear@mail.med.upenn.edu jaster@partners.org.
Cancer Research Institute of the Slovak Academy of Sciences · SKHarvard University · USInstitut thématique Génétique, génomique et bioinformatique · FRBrigham and Women's Hospital · USChildren's Hospital of Philadelphia · USDana-Farber Cancer Institute · USMassachusetts General Hospital · USTongji University · CN

Funding

UNIVERSITY OF PENNSYLVANIA CAN CTR SUPPORT GRANTP30CA016520 · NCI · UNIVERSITY OF PENNSYLVANIA · PI SHELLEY L BERGER · 1985 to 2026
$222.3M
TRANSGENIC AND CHIMERIC MOUSE COREP30DK050306 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI Ken Hashigiwa Cadwell · 1997 to 2026
$32.5M
PATHOPHYSIOLOGY OF HUMAN BLOOD CELLST32HL007574 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI Daniel Evan Bauer · 1985 to 2026
$18.4M
Protein CoreP01CA119070 · NCI · BRIGHAM AND WOMEN'S HOSPITAL · PI ASTER, JON C. · 2006 to 2016
$10.3M
SUPPLEMENT FOR MARC SCIENTIFIC COMMUNICATIONS TECHNOLOGYT34GM008078 · NIGMS · BROOKLYN COLLEGE · PI HAINLINE, LOUISE, RABIN, LAURA A. · 1985 to 2022
$8.2M
High-throughput sequencing of chromatin regulatory elementsU54HG004570 · NHGRI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI BERNSTEIN, BRADLEY EVAN · 2007 to 2011
$8.1M
Expanding the catalog of chromatin regulatory elements in the human genomeU54HG006991 · NHGRI · BROAD INSTITUTE, INC. · PI BERNSTEIN, BRADLEY EVAN · 2012 to 2016
$7.9M
Notch Regulation of Hematopoietic Cell FatesR01AI047833 · NIAID · UNIVERSITY OF PENNSYLVANIA · PI JORDAN, MARTHA S, PEAR, WARREN S · 2000 to 2022
$7.4M
UPenn Post Baccalaureate Research Education Program.R25GM071745 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI BHOJ, ELIZABETH JOYCE, KESSLER, DANIEL S · 2005 to 2024
$6.4M
TRAINING PROGRAM IN DEVELOPMENTAL BIOLOGYT32HD007516 · NICHD · UNIVERSITY OF PENNSYLVANIA · PI RAPER, JONATHAN A · 1998 to 2012
$5.6M
SOMATOGENIC/LACTOGENIC HORMONES OF PLACENTA/PITUITARYR01HD025147 · NICHD · UNIVERSITY OF PENNSYLVANIA · PI LIEBHABER, STEPHEN AARON · 1989 to 2014
$5.4M
The Requirement for Trib2 in the Maintenance of Acute Myeloid LeukemiaF31CA165813 · NCI · UNIVERSITY OF PENNSYLVANIA · PI BAILIS, WILL H. · 2012 to 2014
$76k
NCI NIH HHS 1F31CA165813NCI NIH HHS F31 CA165813NCI NIH HHS P01 CA119070NCI NIH HHS P30 CA016520NHGRI NIH HHS U54 HG004570NHGRI NIH HHS U54 HG006991NHLBI NIH HHS T32 HL007574NHLBI NIH HHS T32HL007574NIAID NIH HHS R01 AI047833NIAID NIH HHS R01AI047833NICHD NIH HHS R01 HD025147NICHD NIH HHS R01HD25147NICHD NIH HHS T32 HD007516NICHD NIH HHS T32HD007516NIDDK NIH HHS P30 DK050306NIDDK NIH HHS P30-DK050306NIGMS NIH HHS R25 GM071745
6 · The paper itself

Abstract

Notch is needed for T-cell development and is a common oncogenic driver in T-cell acute lymphoblastic leukemia. The protooncogene c-Myc (Myc) is a critical target of Notch in normal and malignant pre-T cells, but how Notch regulates Myc is unknown. Here, we identify a distal enhancer located >1 Mb 3' of human and murine Myc that binds Notch transcription complexes and physically interacts with the Myc proximal promoter. The Notch1 binding element in this region activates reporter genes in a Notch-dependent, cell-context-specific fashion that requires a conserved Notch complex binding site. Acute changes in Notch activation produce rapid changes in H3K27 acetylation across the entire enhancer (a region spanning >600 kb) that correlate with Myc expression. This broad Notch-influenced region comprises an enhancer region containing multiple domains, recognizable as discrete H3K27 acetylation peaks. Leukemia cells selected for resistance to Notch inhibitors express Myc despite epigenetic silencing of enhancer domains near the Notch transcription complex binding sites. Notch-independent expression of Myc in resistant cells is highly sensitive to inhibitors of bromodomain containing 4 (Brd4), a change in drug sensitivity that is accompanied by preferential association of the Myc promoter with more 3' enhancer domains that are strongly dependent on Brd4 for function. These findings indicate that altered long-range enhancer activity can mediate resistance to targeted therapies and provide a mechanistic rationale for combined targeting of Notch and Brd4 in leukemia.

Indexed as

Genes, mycAnimalsBase SequenceBromodomain Containing ProteinsCell Cycle ProteinsCell Line, TumorChromatin ImmunoprecipitationEnhancer Elements, GeneticGene Expression Regulation, LeukemicGenes, ReporterGenome-Wide Association StudyHistonesHumansImmunoglobulin J Recombination Signal Sequence-Binding ProteinModels, MolecularMolecular Sequence DataBRD4 protein, humanBrd4 protein, mouseBromodomain Containing ProteinsCell Cycle ProteinsHistonesImmunoglobulin J Recombination Signal Sequence-Binding ProteinNeoplasm ProteinsNOTCH1 protein, humanNotch1 protein, mouseNuclear ProteinsRBPJ protein, humanRbpj protein, mouseReceptor, Notch1Transcription FactorsBrd4chromatinenhancergene regulationtranscription

Identifiers

PMID25369933
PMCPMC4246292
OpenAlexW2046085162

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.