Evidence map›Paper›PMID 25369635›Full record

ArticleeLife2014

Identification of 'erasers' for lysine crotonylated histone marks using a chemical proteomics approach.

Xiucong Bao, Yi Wang, Xin Li, Xiao-Meng Li, Zheng Liu, Tangpo Yang, Chi Fat Wong, Jiangwen Zhang, Quan Hao, Xiang David Li

Open access · goldAbstract read
In one paragraph

Article in eLife, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 166 papers.

0numbers the graph read from it
0cells of the map it votes in
166citing papers in PubMed
14.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

166 citing papers in PubMed, 313 citations in OpenAlex.

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  19. Histone crotonylation in tumors (Review).Molecular and clinical oncology · 2025
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106 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Xiucong BaoDepartment of Chemistry, University of Hong Kong, Hong Kong, Hong Kong.
Yi WangDepartment of Physiology, University of Hong Kong, Hong Kong, Hong Kong.
Xin LiDepartment of Chemistry, University of Hong Kong, Hong Kong, Hong Kong.
Xiao-Meng LiDepartment of Chemistry, University of Hong Kong, Hong Kong, Hong Kong.
Zheng LiuDepartment of Chemistry, University of Hong Kong, Hong Kong, Hong Kong.
Tangpo YangDepartment of Chemistry, University of Hong Kong, Hong Kong, Hong Kong.
Chi Fat WongSchool of Biological Sciences, University of Hong Kong, Hong Kong, Hong Kong.
Jiangwen ZhangSchool of Biological Sciences, University of Hong Kong, Hong Kong, Hong Kong.
Quan HaoDepartment of Physiology, University of Hong Kong, Hong Kong, Hong Kong.
Xiang David LiDepartment of Chemistry, University of Hong Kong, Hong Kong, Hong Kong.
University of Hong Kong · HK

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Posttranslational modifications (PTMs) play a crucial role in a wide range of biological processes. Lysine crotonylation (Kcr) is a newly discovered histone PTM that is enriched at active gene promoters and potential enhancers in mammalian cell genomes. However, the cellular enzymes that regulate the addition and removal of Kcr are unknown, which has hindered further investigation of its cellular functions. Here we used a chemical proteomics approach to comprehensively profile 'eraser' enzymes that recognize a lysine-4 crotonylated histone H3 (H3K4Cr) mark. We found that Sirt1, Sirt2, and Sirt3 can catalyze the hydrolysis of lysine crotonylated histone peptides and proteins. More importantly, Sirt3 functions as a decrotonylase to regulate histone Kcr dynamics and gene transcription in living cells. This discovery not only opens opportunities for examining the physiological significance of histone Kcr, but also helps to unravel the unknown cellular mechanisms controlled by Sirt3, that have previously been considered solely as a deacetylase.

Indexed as

Genome, HumanProtein Processing, Post-TranslationalBiotinClick ChemistryCrotonatesHEK293 CellsHeLa CellsHistonesHumansHydrolysisIsotope LabelingLysineModels, MolecularPeptidesPromoter Regions, GeneticProtein BindingBiotinCrotonatesHistonesLysinePeptidesRecombinant ProteinsSIRT1 protein, humanSIRT2 protein, humanSIRT3 protein, humanSirtuin 1Sirtuin 2Sirtuin 3Streptavidinbiochemistrychemical proteomicscrotonylationE. coliposttranslational modification

Identifiers

PMID25369635
PMCPMC4358366
OpenAlexW2109845335

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.