Evidence map›Paper›PMID 25369202›Full record

ArticlePloS one2014

Dynamical modeling of the cell cycle and cell fate emergence in Caulobacter crescentus.

César Quiñones-Valles, Ismael Sánchez-Osorio, Agustino Martínez-Antonio

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.7field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 18 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

César Quiñones-VallesEngineering and Biomedical Physics Department, Center for Research and Advanced Studies of the National Polytechnic Institute at Monterrey, Apodaca, Nuevo León, México; Genetic Engineering Department, Center for Research and Advanced Studies of the National Polytechnic Institute at Irapuato, Irapuato, Guanajuato, México.
Ismael Sánchez-OsorioGenetic Engineering Department, Center for Research and Advanced Studies of the National Polytechnic Institute at Irapuato, Irapuato, Guanajuato, México.
Agustino Martínez-AntonioGenetic Engineering Department, Center for Research and Advanced Studies of the National Polytechnic Institute at Irapuato, Irapuato, Guanajuato, México.
Instituto Tecnológico Superior de Irapuato · MXInstituto Politécnico Nacional · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The division of Caulobacter crescentus, a model organism for studying cell cycle and differentiation in bacteria, generates two cell types: swarmer and stalked. To complete its cycle, C. crescentus must first differentiate from the swarmer to the stalked phenotype. An important regulator involved in this process is CtrA, which operates in a gene regulatory network and coordinates many of the interactions associated to the generation of cellular asymmetry. Gaining insight into how such a differentiation phenomenon arises and how network components interact to bring about cellular behavior and function demands mathematical models and simulations. In this work, we present a dynamical model based on a generalization of the Boolean abstraction of gene expression for a minimal network controlling the cell cycle and asymmetric cell division in C. crescentus. This network was constructed from data obtained from an exhaustive search in the literature. The results of the simulations based on our model show a cyclic attractor whose configurations can be made to correspond with the current knowledge of the activity of the regulators participating in the gene network during the cell cycle. Additionally, we found two point attractors that can be interpreted in terms of the network configurations directing the two cell types. The entire network is shown to be operating close to the critical regime, which means that it is robust enough to perturbations on dynamics of the network, but adaptable to environmental changes.

Indexed as

Models, BiologicalBacterial ProteinsCaulobacter crescentusCell DivisionGene Regulatory NetworksInterphaseBacterial Proteins

Identifiers

PMID25369202
PMCPMC4219702
OpenAlexW2039053136

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.