Evidence map›Paper›PMID 25368820›Full record

ArticleAnnals of laboratory medicine2014

Evaluation of PCR-reverse blot hybridization assay, REBA Sepsis-ID test, for simultaneous identification of bacterial pathogens and mecA and van genes from blood culture bottles.

Soon Deok Park, Gyusang Lee, Hye-Young Wang, Min Park, Sunghyun Kim, Hyunjung Kim, Jungho Kim, Young Keun Kim, Hyo Youl Kim, Hyeyoung Lee and 2 more

Abstract readEvaluation Study
In one paragraph

Article in Annals of laboratory medicine, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

12 authors.

Soon Deok ParkDepartment of Laboratory Medicine, Yonsei University Wonju College of Medicine, Wonju, Korea.
Gyusang LeeDepartment of Biomedical Laboratory Science, College of Health Sciences, Yonsei University, Wonju, Korea.
Hye-Young WangM&D, Inc., Wonju Eco Environmental Technology Center, Wonju, Korea.
Min ParkDepartment of Biomedical Laboratory Science, College of Health Sciences, Yonsei University, Wonju, Korea.
Sunghyun KimDepartment of Biomedical Laboratory Science, College of Health Sciences, Yonsei University, Wonju, Korea.
Hyunjung KimDepartment of Biomedical Laboratory Science, College of Health Sciences, Yonsei University, Wonju, Korea.
Jungho KimDepartment of Biomedical Laboratory Science, College of Health Sciences, Yonsei University, Wonju, Korea.
Young Keun KimDepartment of Internal Medicine, Yonsei University Wonju College of Medicine, Wonju, Korea.
Hyo Youl KimDepartment of Internal Medicine, Yonsei University Wonju College of Medicine, Wonju, Korea.
Hyeyoung LeeDepartment of Biomedical Laboratory Science, College of Health Sciences, Yonsei University, Wonju, Korea.
Young UhDepartment of Laboratory Medicine, Yonsei University Wonju College of Medicine, Wonju, Korea.
Jong Bae KimDepartment of Biomedical Laboratory Science, College of Health Sciences, Yonsei University, Wonju, Korea.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe aim of this study was to evaluate a newly developed PCR-based reverse blot hybridization assay (PCR-REBA), REBA Sepsis-ID (M&D, Wonju, Korea), to rapidly detect the presence of bacteremia and antimicrobial resistance gene in blood culture samples.

methodsOne thousand four hundred consecutive blood culture samples from patients with a delta neutrophil index greater than 2.7% were selected from March to July in 2013. Three hundred positive and 1,100 negative for bacterial growth in blood culture bottles samples were tested by conventional and real-time PCR-REBA, respectively.

resultsThe overall agreement between the conventional identification test and the REBA Sepsis-ID test was 95.3% (286/300). Agreement for gram-positive bacteria, gram-negative bacteria, fungi, and polymicrobials was 94.5% (190/201), 97.3% (71/73), 100% (14/14), and 91.7% (11/12), respectively. The detection rate of the mecA gene from methicillin-resistant Staphylococcus isolates was 97.8% (90/92). The vanA gene was detected in one blood culture sample from which vancomycin-resistant Enterococcus was isolated. When the cycle threshold for real-time PCR was defined as 30.0, 2.4% (26/1,100) of negative blood culture samples tested positive by real-time PCR.

conclusionsThe REBA Sepsis-ID test is capable of simultaneously and quickly detecting both causative agents and antimicrobial resistance genes, such as mecA and van, in blood culture positive samples.

Indexed as

Nucleic Acid HybridizationReal-Time Polymerase Chain ReactionBacteremiaBacterial ProteinsBacteriological TechniquesCarbon-Oxygen LigasesDrug Resistance, BacterialEnterococcusHumansMethicillin-Resistant Staphylococcus aureusPenicillin-Binding ProteinsReagent Kits, DiagnosticRNA, Ribosomal, 16SBacterial ProteinsCarbon-Oxygen LigasesmecA protein, Staphylococcus aureusPenicillin-Binding ProteinsReagent Kits, DiagnosticRNA, Ribosomal, 16SVanA ligase, BacteriaBacteremiaBlood CultureBlotHybridizationmecAReal-time PCRVancomycin resistance

Identifiers

PMID25368820
PMCPMC4215418

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.