ArticleFrontiers in plant science2014
Using multi-locus allelic sequence data to estimate genetic divergence among four Lilium (Liliaceae) cultivars.
Article in Frontiers in plant science, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.
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Who cites it
7 citing papers in PubMed, 10 citations in OpenAlex.
- Development of EST-SSR markers based on transcriptome sequencing for germplasm evaluation of 65 lilies (Lilium).Molecular biology reports · 2023Article
- Fire Blight Susceptibility inFrontiers in plant science · 2021Article
- Transcriptome wide SSR discovery cross-taxa transferability and development of marker database for studying genetic diversity population structure of Lilium species.Scientific reports · 2020Article
- Transcriptome Sequencing Analysis Provides Insights Into the Response toEvolutionary bioinformatics online · 2019Article
- Article
- Spatiotemporal Transcriptome Analysis Provides Insights into Bicolor Tepal Development inFrontiers in plant science · 2017Article
- Biotechnological advances in Lilium.Plant cell reports · 2016Review
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Authors and funding
5 authors at 1 institution in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Next Generation Sequencing (NGS) may enable estimating relationships among genotypes using allelic variation of multiple nuclear genes simultaneously. We explored the potential and caveats of this strategy in four genetically distant Lilium cultivars to estimate their genetic divergence from transcriptome sequences using three approaches: POFAD (Phylogeny of Organisms from Allelic Data, uses allelic information of sequence data), RAxML (Randomized Accelerated Maximum Likelihood, tree building based on concatenated consensus sequences) and Consensus Network (constructing a network summarizing among gene tree conflicts). Twenty six gene contigs were chosen based on the presence of orthologous sequences in all cultivars, seven of which also had an orthologous sequence in Tulipa, used as out-group. The three approaches generated the same topology. Although the resolution offered by these approaches is high, in this case there was no extra benefit in using allelic information. We conclude that these 26 genes can be widely applied to construct a species tree for the genus Lilium.
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Registered trials
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