Evidence map›Paper›PMID 25368327›Full record

ArticleThe Journal of biological chemistry2014

Small ubiquitin-like modifier (SUMO)-mediated repression of the Xenopus Oocyte 5 S rRNA genes.

Mariam Q Malik, Michelle M Bertke, Paul W Huber

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.1field-weighted citation impact, top 47% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Mariam Q MalikFrom the Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556.
Michelle M BertkeFrom the Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556.
Paul W HuberFrom the Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana 46556 huber.1@nd.edu.
University of Notre Dame · US

Funding

PROTEIN BINDING DOMAINS ON EUKARYOTIC 5S RRNA AND RDNAR01GM038200 · NIGMS · UNIVERSITY OF NOTRE DAME · PI HUBER, PAUL WILLIAM · 1992 to 2000
$233k
NIGMS NIH HHS R01 GM038200
6 · The paper itself

Abstract

The 5 S rRNA gene-specific transcription factor IIIA (TFIIIA) interacts with the small ubiquitin-like modifier (SUMO) E3 ligase PIAS2b and with one of its targets, the transcriptional corepressor, XCtBP. PIAS2b is restricted to the cytoplasm of Xenopus oocytes but relocates to the nucleus immediately after fertilization. Following the midblastula transition, PIAS2b and XCtBP are present on oocyte-type, but not somatic-type, 5 S rRNA genes up through the neurula stage, as is a limiting amount of TFIIIA. Histone H3 methylation, coincident with the binding of XCtBP, also occurs exclusively on the oocyte-type genes. Immunohistochemical staining of embryos confirms the occupancy of a subset of the oocyte-type genes by TFIIIA that become positioned at the nuclear periphery shortly after the midblastula transition. Inhibition of SUMOylation activity relieves repression of oocyte-type 5 S rRNA genes and is correlated with a decrease in methylation of H3K9 and H3K27 and disruption of subnuclear localization. These results reveal a novel function for TFIIIA as a negative regulator that recruits histone modification activity through the CtBP repressor complex exclusively to the oocyte-type 5 S rRNA genes, leading to their terminal repression.

Indexed as

Gene Expression Regulation, DevelopmentalAnimalsBlotting, WesternCell NucleusEmbryo, NonmammalianHistonesImmunohistochemistryLysineMethylationMicroscopy, ConfocalOocytesProtein BindingRNA, Ribosomal, 5SSumoylationTranscription Factor TFIIIATwo-Hybrid System TechniquesHistonesLysineRNA, Ribosomal, 5STranscription Factor TFIIIAXenopus Proteins5 S rRNA GenesHistone MethylationPIAS2bRNA Polymerase IIISUMOylationTFIIIATranscription RepressorXCtBPXenopus

Identifiers

PMID25368327
PMCPMC4271232
OpenAlexW1988652723

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.