Evidence map›Paper›PMID 25368324›Full record

ArticleThe Journal of biological chemistry2014

The biosynthesis of UDP-d-FucNAc-4N-(2)-oxoglutarate (UDP-Yelosamine) in Bacillus cereus ATCC 14579: Pat and Pyl, an aminotransferase and an ATP-dependent Grasp protein that ligates 2-oxoglutarate to UDP-4-amino-sugars.

Soyoun Hwang, Zi Li, Yael Bar-Peled, Avi Aronov, Jaime Ericson, Maor Bar-Peled

Open access · hybridAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 21 citations in OpenAlex.

  1. Proteome-wide bioinformatic annotation and functional validation of the monotopic phosphoglycosyl transferase superfamily.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  2. Article
  3. Article
  4. A four-gene operon inThe Journal of biological chemistry · 2017
    Article
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  8. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Soyoun HwangFrom the Complex Carbohydrate Research Center and.
Zi LiFrom the Complex Carbohydrate Research Center and Department of Plant Biology, University of Georgia, Athens, Georgia 30602.
Yael Bar-PeledFrom the Complex Carbohydrate Research Center and.
Avi AronovFrom the Complex Carbohydrate Research Center and.
Jaime EricsonFrom the Complex Carbohydrate Research Center and.
Maor Bar-PeledFrom the Complex Carbohydrate Research Center and Department of Plant Biology, University of Georgia, Athens, Georgia 30602 peled@ccrc.uga.edu.
Carbohydrate Competence Center · NLUniversity of Georgia · US

Funding

Electronics Consoles for Biomolecular NMRS10RR027097 · NCRR · UNIVERSITY OF GEORGIA · PI URBAUER, JEFFREY L · 2011 to 2011
$364k
NCRR NIH HHS S10 RR027097
6 · The paper itself

Abstract

Surface glycan switching is often observed when micro-organisms transition between different biotic and abiotic niches, including biofilms, although the advantages of this switching to the organism are not well understood. Bacillus cereus grown in a biofilm-inducing medium has been shown to synthesize an unusual cell wall polysaccharide composed of the repeating subunit →6)Gal(α1-2)(2-R-hydroxyglutar-5-ylamido)Fuc2NAc4N(α1-6)GlcNAc(β1→, where galactose is linked to the hydroxyglutarate moiety of FucNAc-4-amido-(2)-hydroxyglutarate. The molecular mechanism involved in attaching 2-hydroxyglutarate to 4-amino-FucNAc has not been determined. Here, we show two genes in B. cereus ATCC 14579 encoding enzymes involved in the synthesis of UDP-FucNAc-4-amido-(2)-oxoglutarate (UDP-Yelosamine), a modified UDP-sugar not previously reported to exist. Using mass spectrometry and real time NMR spectroscopy, we show that Bc5273 encodes a C4″-aminotransferase (herein referred to as Pat) that, in the presence of pyridoxal phosphate, transfers the primary amino group of l-Glu to C-4″ of UDP-4-keto-6-deoxy-d-GlcNAc to form UDP-4-amino-FucNAc and 2-oxoglutarate. Pat also converts 4-keto-xylose, 4-keto-glucose, and 4-keto-2-acetamido-altrose to their corresponding UDP-4-amino-sugars. Bc5272 encodes a carboxylate-amine ligase (herein referred as Pyl) that, in the presence of ATP and Mg(II), adds 2-oxoglutarate to the 4-amino moiety of UDP-4-amino-FucNAc to form UDP-Yelosamine and ADP. Pyl is also able to ligate 2-oxoglutarate to other 4-amino-sugar derivatives to form UDP-Yelose, UDP-Solosamine, and UDP-Aravonose. Characterizing the metabolic pathways involved in the formation of modified nucleotide sugars provides a basis for understanding some of the mechanisms used by bacteria to modify or alter their cell surface polysaccharides in response to changing growth and environmental challenges.

Indexed as

Bacillus cereusBacterial ProteinsCarbamoyl-Phosphate Synthase (Ammonia)Carbohydrate SequenceChromatography, High Pressure LiquidElectrophoresis, Polyacrylamide GelEscherichia coliHydrogen-Ion ConcentrationKineticsMass SpectrometryMolecular Sequence DataProton Magnetic Resonance SpectroscopyRecombinant ProteinsSubstrate SpecificityTransaminasesUridine Diphosphate SugarsBacterial ProteinsCarbamoyl-Phosphate Synthase (Ammonia)Recombinant ProteinsTransaminasesUridine Diphosphate SugarsBacterial MetabolismBiofilmCarbohydrate BiosynthesisEnzyme CatalysisGlycobiology

Identifiers

PMID25368324
PMCPMC4271244
OpenAlexW1971223866

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.