Evidence map›Paper›PMID 25367906›Full record

ArticleAntimicrobial agents and chemotherapy2015

A chemical rescue screen identifies a Plasmodium falciparum apicoplast inhibitor targeting MEP isoprenoid precursor biosynthesis.

Wesley Wu, Zachary Herrera, Danny Ebert, Katie Baska, Seok H Cho, Joseph L DeRisi, Ellen Yeh

Abstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. TargetingJournal of medicinal chemistry · 2024
    Article
  7. Article
  8. Article
  9. Review
  10. Review
  11. Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Malaria Box-Inspired Discovery ofACS medicinal chemistry letters · 2022
    Article
  17. Article
  18. Antiplasmodial activity of the natural product compounds alstonine and himbeline.International journal for parasitology. Drugs and drug resistance · 2021
    Article
  19. Essential Genes of the Parasitic Apicomplexa.Trends in parasitology · 2021
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Wesley WuDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, California, USA.
Zachary HerreraDepartment of Biochemistry, Stanford Medical School, Stanford, California, USA.
Danny EbertDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, California, USA.
Katie BaskaDepartment of Biochemistry, Stanford Medical School, Stanford, California, USA.
Seok H ChoDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, California, USA.
Joseph L DeRisiDepartment of Biochemistry and Biophysics, University of California, San Francisco, San Francisco, California, USA Howard Hughes Medical Institute, Chevy Chase, Maryland, USA joe@derisilab.ucsf.edu ellenyeh@stanford.edu.
Ellen YehDepartment of Biochemistry, Stanford Medical School, Stanford, California, USA Department of Pathology, Stanford Medical School, Stanford, California, USA Department of Microbiology and Immunology, Stanford Medical School, Stanford, California, USA joe@derisilab.ucsf.edu ellenyeh@stanford.edu.

Funding

Defining the novel eukaryotic biology of the Apicomplexan plastidDP5OD012119 · OD · STANFORD UNIVERSITY · PI YEH, ELLEN · 2012 to 2016
$2.0M
Deciphering apicoplast function during blood stage Plasmodium infectionK08AI097239 · NIAID · STANFORD UNIVERSITY · PI YEH, ELLEN · 2012 to 2016
$666k
Howard Hughes Medical InstituteNIAID NIH HHS K08 AI097239NIAID NIH HHS NIH 1K08AI097239NIH HHS DP5 OD012119NIH HHS NIH 1DP5OD012119
6 · The paper itself

Abstract

The apicoplast is an essential plastid organelle found in Plasmodium parasites which contains several clinically validated antimalarial-drug targets. A chemical rescue screen identified MMV-08138 from the "Malaria Box" library of growth-inhibitory antimalarial compounds as having specific activity against the apicoplast. MMV-08138 inhibition of blood-stage Plasmodium falciparum growth is stereospecific and potent, with the most active diastereomer demonstrating a 50% effective concentration (EC50) of 110 nM. Whole-genome sequencing of 3 drug-resistant parasite populations from two independent selections revealed E688Q and L244I mutations in P. falciparum IspD, an enzyme in the MEP (methyl-d-erythritol-4-phosphate) isoprenoid precursor biosynthesis pathway in the apicoplast. The active diastereomer of MMV-08138 directly inhibited PfIspD activity in vitro with a 50% inhibitory concentration (IC50) of 7.0 nM. MMV-08138 is the first PfIspD inhibitor to be identified and, together with heterologously expressed PfIspD, provides the foundation for further development of this promising antimalarial drug candidate lead. Furthermore, this report validates the use of the apicoplast chemical rescue screen coupled with target elucidation as a discovery tool to identify specific apicoplast-targeting compounds with new mechanisms of action.

Indexed as

Aldose-Ketose IsomerasesAntimalarialsApicoplastsBase SequenceCarbolinesDNA, ProtozoanErythritolErythrocytesHumansMalaria, FalciparumParasitic Sensitivity TestsPlasmodium falciparumSequence Analysis, DNATerpenesAldose-Ketose IsomerasesAntimalarialsCarbolinesDNA, ProtozoanErythritolMMV-08138Terpenes

Identifiers

PMID25367906
PMCPMC4291372

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.