Evidence map›Paper›PMID 25366321›Full record

ArticleEMBO reports2014

The RtcB RNA ligase is an essential component of the metazoan unfolded protein response.

Sara Guckian Kosmaczewski, Tyson James Edwards, Sung Min Han, Matthew J Eckwahl, Benjamin Isaiah Meyer, Sally Peach, Jay R Hesselberth, Sandra L Wolin, Marc Hammarlund

Open access · bronzeAbstract read
In one paragraph

Article in EMBO reports, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 112 papers.

0numbers the graph read from it
0cells of the map it votes in
112citing papers in PubMed
6.5field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

112 citing papers in PubMed, 158 citations in OpenAlex.

  1. Review
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  8. RNase L Regulates Antiviral Responsiveness through Cleavage of XBP1 mRNA.bioRxiv : the preprint server for biology · 2026
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52 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Sara Guckian KosmaczewskiDepartment of Genetics and Program in Cellular Neuroscience, Neurodegeneration and Repair, Yale University School of Medicine, New Haven, CT, USA.
Tyson James EdwardsDepartment of Genetics and Program in Cellular Neuroscience, Neurodegeneration and Repair, Yale University School of Medicine, New Haven, CT, USA.
Sung Min HanDepartment of Genetics and Program in Cellular Neuroscience, Neurodegeneration and Repair, Yale University School of Medicine, New Haven, CT, USA.
Matthew J EckwahlDepartment of Cell Biology, Yale University School of Medicine, New Haven, CT, USA.
Benjamin Isaiah MeyerDepartment of Genetics and Program in Cellular Neuroscience, Neurodegeneration and Repair, Yale University School of Medicine, New Haven, CT, USA.
Sally PeachBiochemistry & Molecular Genetics Department, University of Colorado School of Medicine, Aurora, CO, USA.
Jay R HesselberthBiochemistry & Molecular Genetics Department, University of Colorado School of Medicine, Aurora, CO, USA.
Sandra L WolinDepartment of Cell Biology, Yale University School of Medicine, New Haven, CT, USA.
Marc HammarlundDepartment of Genetics and Program in Cellular Neuroscience, Neurodegeneration and Repair, Yale University School of Medicine, New Haven, CT, USA marc.hammarlund@yale.edu.
Yale University · USUniversity of Colorado Denver · US

Funding

University of Colorado Cancer Center Support Grant - Lung Cancer Patient-Derived Xenografts with Autologous Human Immune SystemsP30CA046934 · NCI · UNIVERSITY OF COLORADO DENVER · PI James V Degregori · 1988 to 2026
$117.0M
Skill Development for Diverse Scientific Careers: A New Course Predoctoral Program in Cellular and Molecular BiologyT32GM007223 · NIGMS · YALE UNIVERSITY · PI BASERGA, SUSAN J · 1985 to 2019
$31.0M
Enhancing and expanding the CGC Strain CollectionP40OD010440 · OD · UNIVERSITY OF MINNESOTA · PI Aric L Daul, Ann E. Rougvie · 2012 to 2026
$7.5M
RNA quality control and environmental stressR01GM073863 · NIGMS · YALE UNIVERSITY · PI TSCHUDI, CHRISTIAN · 2005 to 2017
$3.6M
Predoctoral Training Program in Molecular BiologyT32GM008730 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI PREKERIS, RYTIS, SCLAFANI, ROBERT A · 1999 to 2019
$3.3M
Biogenesis of Small RNAsR01GM048410 · NIGMS · YALE UNIVERSITY · PI WOLIN, SANDRA L. · 1998 to 2009
$2.2M
Horseman, pass by: finding post-developmental functions of essential genesR01NS066082 · NINDS · YALE UNIVERSITY · PI HAMMARLUND, MARC · 2009 to 2012
$1.3M
A novel mechanism that inhibits axon regenerationR56NS081217 · NINDS · YALE UNIVERSITY · PI HAMMARLUND, MARC · 2014 to 2014
$416k
NCI NIH HHS P30 CA046934NIGMS NIH HHS R01 GM048410NIGMS NIH HHS R01GM048410NIGMS NIH HHS R01 GM073863NIGMS NIH HHS R01GM073863NIGMS NIH HHS T32 GM007223NIGMS NIH HHS T32GM007223NIGMS NIH HHS T32 GM008730NIGMS NIH HHS T32GM008730NIH HHS P40 OD010440NIH HHS P40OD010440NINDS NIH HHS R01 NS066082NINDS NIH HHS R01NS066082NINDS NIH HHS R56 NS081217NINDS NIH HHS R56NS081217
6 · The paper itself

Abstract

RNA ligation can regulate RNA function by altering RNA sequence, structure and coding potential. For example, the function of XBP1 in mediating the unfolded protein response requires RNA ligation, as does the maturation of some tRNAs. Here, we describe a novel in vivo model in Caenorhabditis elegans for the conserved RNA ligase RtcB and show that RtcB ligates the xbp-1 mRNA during the IRE-1 branch of the unfolded protein response. Without RtcB, protein stress results in the accumulation of unligated xbp-1 mRNA fragments, defects in the unfolded protein response, and decreased lifespan. RtcB also ligates endogenous pre-tRNA halves, and RtcB mutants have defects in growth and lifespan that can be bypassed by expression of pre-spliced tRNAs. In addition, animals that lack RtcB have defects that are independent of tRNA maturation and the unfolded protein response. Thus, RNA ligation by RtcB is required for the function of multiple endogenous target RNAs including both xbp-1 and tRNAs. RtcB is uniquely capable of performing these ligation functions, and RNA ligation by RtcB mediates multiple essential processes in vivo.

Indexed as

AnimalsCaenorhabditis elegansCaenorhabditis elegans ProteinsCarrier ProteinsRNA Ligase (ATP)Unfolded Protein ResponseCaenorhabditis elegans ProteinsCarrier ProteinsRNA Ligase (ATP)XBP-1 protein, C elegansCaenorhabditis elegansHSPC117RtcBtRNAxbp‐1

Identifiers

PMID25366321
PMCPMC4264930
OpenAlexW2156556259

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.