Evidence map›Paper›PMID 25365582›Full record

ReviewViruses2014

Integration site and clonal expansion in human chronic retroviral infection and gene therapy.

Heather A Niederer, Charles R M Bangham

Open access · goldAbstract readReview
In one paragraph

Review in Viruses, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Review
  3. Review
  4. Joint profiling of chromatin accessibility and CAR-T integration site analysis at population and single-cell levels.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  5. Molecular biology of human T cell leukemia virus.Seminars in diagnostic pathology · 2020
    Review
  6. Review
  7. Historical review of the causes of cancer.World journal of clinical oncology · 2016
    Review
  8. Review
  9. Retroviral integration: Site matters: Mechanisms and consequences of retroviral integration site selection.BioEssays : news and reviews in molecular, cellular and developmental biology · 2015
    Review
  10. Review
  11. Multifunctional facets of retrovirus integrase.World journal of biological chemistry · 2015
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Heather A NiedererDepartment of Immunology, Wright-Fleming Institute, Imperial College London, London W2 1PG, UK. h.niederer@imperial.ac.uk.
Charles R M BanghamDepartment of Immunology, Wright-Fleming Institute, Imperial College London, London W2 1PG, UK. c.bangham@imperial.ac.uk.
Imperial College London · GB

Funding

Medical Research Council MR/K019090/1
6 · The paper itself

Abstract

Retroviral vectors have been successfully used therapeutically to restore expression of genes in a range of single-gene diseases, including several primary immunodeficiency disorders. Although clinical trials have shown remarkable results, there have also been a number of severe adverse events involving malignant outgrowth of a transformed clonal population. This clonal expansion is influenced by the integration site profile of the viral integrase, the transgene expressed, and the effect of the viral promoters on the neighbouring host genome. Infection with the pathogenic human retrovirus HTLV-1 also causes clonal expansion of cells containing an integrated HTLV-1 provirus. Although the majority of HTLV-1-infected people remain asymptomatic, up to 5% develop an aggressive T cell malignancy. In this review we discuss recent findings on the role of the genomic integration site in determining the clonality and the potential for malignant transformation of cells carrying integrated HTLV-1 or gene therapy vectors, and how these results have contributed to the understanding of HTLV-1 pathogenesis and to improvements in gene therapy vector safety.

Indexed as

Genetic VariationGenetic VectorsVirus IntegrationCell ProliferationChronic DiseaseGenetic TherapyGenotypeHumansRecombination, GeneticRetroviridaeRetroviridae InfectionsTumor Virus Infections

Identifiers

PMID25365582
PMCPMC4246213
OpenAlexW2044331096

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.