ArticlePloS one2014
Complete chloroplast genome sequence of poisonous and medicinal plant Datura stramonium: organizations and implications for genetic engineering.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 45 papers.
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45 citing papers in PubMed, 116 citations in OpenAlex.
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- Genus Datura: An Exploration of Genetic Alterations, Bioactive Compounds, and Pharmacological Activity.Plants (Basel, Switzerland) · 2025Review
- The complete chloroplast genome ofMitochondrial DNA. Part B, Resources · 2025Article
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- Phylogenetic analysis and divergence time estimation of Lycium species in China based on the chloroplast genomes.BMC genomics · 2024Article
- Comparative chloroplast genome analysis of five widespread species (Frontiers in genetics · 2024Article
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- Comparison of chloroplast genomes and phylogenetic analysis of four species in Quercus section Cyclobalanopsis.Scientific reports · 2023Article
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- Comparative chloroplast genomes provided insights into the evolution and species identification on the Datureae plants.Frontiers in plant science · 2023Article
- Comparative plastome genomics and phylogenetic relationships of the genusFrontiers in plant science · 2023Article
- Comparative chloroplast genome analyses of Amomum: insights into evolutionary history and species identification.BMC plant biology · 2022Article
- Comparative analysis of the complete chloroplast genomes of six threatened subgenus Gynopodium (Magnolia) species.BMC genomics · 2022Article
- An integrated study of Violae Herba (Viola philippica) and five adulterants by morphology, chemical compositions and chloroplast genomes: insights into its certified plant origin.Chinese medicine · 2022Article
- Comparative chloroplast genome analyses of cultivated spinach and two wild progenitors shed light on the phylogenetic relationships and variation.Scientific reports · 2022Article
- Plant super-barcode: a case study on genome-based identification for closely related species of Fritillaria.Chinese medicine · 2021Article
- Datura genome reveals duplications of psychoactive alkaloid biosynthetic genes and high mutation rate following tissue culture.BMC genomics · 2021Article
- The complete chloroplast genomes of two Mexican plants of the annual herbMitochondrial DNA. Part B, Resources · 2020Article
- Comparing and phylogenetic analysis chloroplast genome of three Achyranthes species.Scientific reports · 2020Article
Corrections and comments
- Erratum issuedYuanye, Dang [corrected to Dang, Yuanye]; Qing, Li [corrected to Li, Qing]; Jinjian, Lu [corrected to Lu, Jinjian]; Xiwen, Li [corrected to Li, Xiwen]; Yitao, Wang [corrected to Wang, Yitao]
Authors and funding
11 authors at 2 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Datura stramonium is a widely used poisonous plant with great medicinal and economic value. Its chloroplast (cp) genome is 155,871 bp in length with a typical quadripartite structure of the large (LSC, 86,302 bp) and small (SSC, 18,367 bp) single-copy regions, separated by a pair of inverted repeats (IRs, 25,601 bp). The genome contains 113 unique genes, including 80 protein-coding genes, 29 tRNAs and four rRNAs. A total of 11 forward, 9 palindromic and 13 tandem repeats were detected in the D. stramonium cp genome. Most simple sequence repeats (SSR) are AT-rich and are less abundant in coding regions than in non-coding regions. Both SSRs and GC content were unevenly distributed in the entire cp genome. All preferred synonymous codons were found to use A/T ending codons. The difference in GC contents of entire genomes and of the three-codon positions suggests that the D. stramonium cp genome might possess different genomic organization, in part due to different mutational pressures. The five most divergent coding regions and four non-coding regions (trnH-psbA, rps4-trnS, ndhD-ccsA, and ndhI-ndhG) were identified using whole plastome alignment, which can be used to develop molecular markers for phylogenetics and barcoding studies within the Solanaceae. Phylogenetic analysis based on 68 protein-coding genes supported Datura as a sister to Solanum. This study provides valuable information for phylogenetic and cp genetic engineering studies of this poisonous and medicinal plant.
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