Evidence map›Paper›PMID 25365308›Full record

ArticlePloS one2014

The TLR4 D299G and T399I SNPs are constitutively active to up-regulate expression of Trif-dependent genes.

Georgina L Hold, Susan Berry, Karin A Saunders, Janice Drew, Claus Mayer, Heather Brookes, Nick J Gay, Emad M El-Omar, Clare E Bryant

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed, 2 pooled it
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 2 syntheses or guidelines pooled it, 24 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. T cell-intrinsic PRR signaling in immunity and pathology.Acta biochimica et biophysica Sinica · 2026
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  8. Toll-like receptor 4 (TLR4) antagonists as potential therapeutics for intestinal inflammation.Indian journal of gastroenterology : official journal of the Indian Society of Gastroenterology · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Georgina L HoldDivision of Applied Medicine, Aberdeen University, Aberdeen, United Kingdom.
Susan BerryDivision of Applied Medicine, Aberdeen University, Aberdeen, United Kingdom.
Karin A SaundersDivision of Applied Medicine, Aberdeen University, Aberdeen, United Kingdom.
Janice DrewRowett Institute of Nutrition and Health, Aberdeen University, Aberdeen, United Kingdom.
Claus MayerBiomathematics & Statistics Scotland, Aberdeen, United Kingdom.
Heather BrookesDepartment of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.
Nick J GayDepartment of Biochemistry, University of Cambridge, Cambridge, United Kingdom.
Emad M El-OmarDivision of Applied Medicine, Aberdeen University, Aberdeen, United Kingdom.
Clare E BryantDepartment of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.
University of Aberdeen · GBUniversity of Cambridge · GBBiomathematics and Statistics Scotland · GB

Funding

Cancer Research UKMedical Research Council G1000133Wellcome Trust 100321
6 · The paper itself

Abstract

Dysregulated Toll-Like Receptor (TLR) signalling and genetic polymorphisms in these proteins are linked to many human diseases. We investigated TLR4 functional variants D299G and T399I to assess the impact on LPS-induced responsiveness in comparison to wild-type TLR4. The mechanism by which this occurs in unclear as these SNPs do not lie within the lipid A binding domain or dimerisation sites of the LPS-TLR4/MD2 receptor complexes. Transfection of TLR4D299G, TLR4T399I or TLR4D299G. T399I into HEK cells resulted in constitutive activation of an NF-κB reporter gene and a blunting of the LPS-induced reporter activation compared to WT-TLR4. Unstimulated human monocyte/macrophages, from patients with the D299G and T399I SNPs demonstrated a downregulation of many genes, particularly Tram/Trif signalling pathway constitutents compared to the TLR4 wild-type subjects supporting the concept of basal receptor activity. Monocyte/macrophages from carriers of the TLR4 D299G and T399I polymorphisms stimulated with LPS showed >6 fold lower levels of NF-κB and ∼12 fold higher IFN-β gene expression levels compared to wild-type subjects (P<0.05; MWU test) and dramatically altered resultant cytokine profiles. We conclude that these TLR4 SNPs affect constitutive receptor activity which impacts on the hosts ability to respond to LPS challenge leading to a dysregulated sub-optimal immune response to infection.

Indexed as

Gene Expression RegulationPolymorphism, Single NucleotideAdaptor Proteins, Vesicular TransportCell LineCluster AnalysisGene Expression ProfilingGene Regulatory NetworksHeterozygoteHumansLeukocytes, MononuclearLipopolysaccharidesNF-kappa BSignal TransductionToll-Like Receptor 4Adaptor Proteins, Vesicular TransportLipopolysaccharidesNF-kappa BTICAM1 protein, humanToll-Like Receptor 4

Identifiers

PMID25365308
PMCPMC4218727
OpenAlexW2125537221

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.