Evidence map›Paper›PMID 25365175›Full record

ArticleInternational journal of molecular sciences2014

Differential proteomics analysis of Bacillus amyloliquefaciens and its genome-shuffled mutant for improving surfactin production.

Junfeng Zhao, Lin Cao, Chong Zhang, Lei Zhong, Jing Lu, Zhaoxin Lu

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.6field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Junfeng ZhaoCollege of Food Science and Technology, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China. zjf780526@sina.com.
Lin CaoCollege of Food Science and Technology, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China. caolin@njau.edu.cn.
Chong ZhangCollege of Food Science and Technology, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China. zhangchong@njau.edu.cn.
Lei ZhongCollege of Food Science and Technology, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China. 2011108029@njau.edu.cn.
Jing LuCollege of Food Science and Technology, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China. 2012108039@njau.edu.cn.
Zhaoxin LuCollege of Food Science and Technology, Nanjing Agricultural University, Nanjing 210095, Jiangsu, China. fmb@njau.edu.cn.
Nanjing Agricultural University · CNHenan University of Science and Technology · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Genome shuffling technology was used as a novel whole-genome engineering approach to rapidly improve the antimicrobial lipopeptide yield of Bacillus amyloliquefaciens. Comparative proteomic analysis of the parental ES-2-4 and genome-shuffled FMB38 strains was conducted to examine the differentially expressed proteins. The proteome was separated by 2-DE (two dimensional electrophoresis) and analyzed by MS (mass spectrum). In the shuffled strain FMB38, 51 differentially expressed protein spots with higher than two-fold spot density were detected by gel image comparison. Forty-six protein spots were detectable by silver staining and further MS analysis. The results demonstrated that among the 46 protein spots expressed particularly induced in the genome-shuffled mutant, 15 were related to metabolism, five to DNA replication, recombination and repair, six to translation and post-translational modifications, one to cell secretion and signal transduction mechanisms, three to surfactin synthesis, two to energy production and conversion, and 14 to others. All these indicated that the metabolic capability of the mutant was improved by the genome shuffling. The study will enable future detailed investigation of gene expression and function linked with surfactin synthesis. The results of proteome analysis may provide information for metabolic engineering of Bacillus amyloliquefaciens for overproduction of surfactin.

Indexed as

Genome, BacterialProteomicsBacillusBacterial ProteinsElectrophoresis, Gel, Two-DimensionalGene Expression Regulation, BacterialIsoelectric PointLipopeptidesMetabolic EngineeringMolecular WeightPeptides, CyclicProteomeRNA, MessengerSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationBacterial ProteinsLipopeptidesPeptides, CyclicProteomeRNA, Messengersurfactin peptide

Identifiers

PMID25365175
PMCPMC4264142
OpenAlexW1997482069

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.