Evidence map›Paper›PMID 25364738›Full record

ReviewFrontiers in cell and developmental biology2014

Computational modeling of heterogeneity and function of CD4+ T cells.

Adria Carbo, Raquel Hontecillas, Tricity Andrew, Kristin Eden, Yongguo Mei, Stefan Hoops, Josep Bassaganya-Riera

Abstract readReview
In one paragraph

Review in Frontiers in cell and developmental biology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed.

  1. Review
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  9. Modeling the Th17 and Tregs Paradigm: Implications for Cancer Immunotherapy.Frontiers in cell and developmental biology · 2021
    Review
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  11. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Adria CarboNutritional Immunology and Molecular Medicine Laboratory, Virginia Bioinformatics Institute, Virginia Tech Blacksburg, VA, USA ; Center for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Virginia Tech Blacksburg, VA, USA.
Raquel HontecillasNutritional Immunology and Molecular Medicine Laboratory, Virginia Bioinformatics Institute, Virginia Tech Blacksburg, VA, USA ; Center for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Virginia Tech Blacksburg, VA, USA.
Tricity AndrewNutritional Immunology and Molecular Medicine Laboratory, Virginia Bioinformatics Institute, Virginia Tech Blacksburg, VA, USA ; Center for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Virginia Tech Blacksburg, VA, USA.
Kristin EdenNutritional Immunology and Molecular Medicine Laboratory, Virginia Bioinformatics Institute, Virginia Tech Blacksburg, VA, USA ; Center for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Virginia Tech Blacksburg, VA, USA.
Yongguo MeiNutritional Immunology and Molecular Medicine Laboratory, Virginia Bioinformatics Institute, Virginia Tech Blacksburg, VA, USA ; Center for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Virginia Tech Blacksburg, VA, USA.
Stefan HoopsCenter for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Virginia Tech Blacksburg, VA, USA.
Josep Bassaganya-RieraNutritional Immunology and Molecular Medicine Laboratory, Virginia Bioinformatics Institute, Virginia Tech Blacksburg, VA, USA ; Center for Modeling Immunity to Enteric Pathogens, Virginia Bioinformatics Institute, Virginia Tech Blacksburg, VA, USA ; Department of Biomedical Sciences and Pathobiology, Virginia-Maryland Regional College of Veterinary Medicine, Virginia Tech Blacksburg, VA, USA.

Funding

COPASI software for modeling and simulation of biochemical networksR01GM080219 · NIGMS · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI HOOPS, STEFAN, MENDES, PEDRO · 2007 to 2019
$5.4M
Mechanisms of Immune Modulation by Abscisic AcidR01AT004308 · NCCIH · VIRGINIA POLYTECHNIC INST AND ST UNIV · PI BASSAGANYA-RIERA, JOSEP · 2007 to 2010
$1.2M
NCCIH NIH HHS R01 AT004308NIAID NIH HHS HHSN272201000056CNIGMS NIH HHS R01 GM080219
6 · The paper itself

Abstract

The immune system is composed of many different cell types and hundreds of intersecting molecular pathways and signals. This large biological complexity requires coordination between distinct pro-inflammatory and regulatory cell subsets to respond to infection while maintaining tissue homeostasis. CD4+ T cells play a central role in orchestrating immune responses and in maintaining a balance between pro- and anti- inflammatory responses. This tight balance between regulatory and effector reactions depends on the ability of CD4+ T cells to modulate distinct pathways within large molecular networks, since dysregulated CD4+ T cell responses may result in chronic inflammatory and autoimmune diseases. The CD4+ T cell differentiation process comprises an intricate interplay between cytokines, their receptors, adaptor molecules, signaling cascades and transcription factors that help delineate cell fate and function. Computational modeling can help to describe, simulate, analyze, and predict some of the behaviors in this complicated differentiation network. This review provides a comprehensive overview of existing computational immunology methods as well as novel strategies used to model immune responses with a particular focus on CD4+ T cell differentiation.

Indexed as

CD4+ T cell differentiationCD4+ T cell dogmacomputational immunologycomputational modelingimmunoinformatics

Identifiers

PMID25364738
PMCPMC4207042

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.