Evidence map›Paper›PMID 25362061›Full record

ArticleApplied and environmental microbiology2015

Nonribosomal peptide synthase gene clusters for lipopeptide biosynthesis in Bacillus subtilis 916 and their phenotypic functions.

Chuping Luo, Xuehui Liu, Huafei Zhou, Xiaoyu Wang, Zhiyi Chen

Open access · bronzeAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 54 papers.

0numbers the graph read from it
0cells of the map it votes in
54citing papers in PubMed
8.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

54 citing papers in PubMed, 136 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Chuping LuoCollege of Plant Protection, Nanjing Agriculture University, Nanjing, China Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing, China luochuping@163.com chzy84390393@163.com.
Xuehui LiuInstitute of Biophysics, Chinese Academy of Sciences, Beijing, China.
Huafei ZhouCollege of Plant Protection, Nanjing Agriculture University, Nanjing, China Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing, China.
Xiaoyu WangCollege of Plant Protection, Nanjing Agriculture University, Nanjing, China.
Zhiyi ChenCollege of Plant Protection, Nanjing Agriculture University, Nanjing, China Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing, China luochuping@163.com chzy84390393@163.com.
Nanjing Agricultural University · CNChinese Academy of Sciences · CNInstitute of Plant Protection · CNJiangsu Academy of Agricultural Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacillus cyclic lipopeptides (LPs) have been well studied for their phytopathogen-antagonistic activities. Recently, research has shown that these LPs also contribute to the phenotypic features of Bacillus strains, such as hemolytic activity, swarming motility, biofilm formation, and colony morphology. Bacillus subtilis 916 not only coproduces the three families of well-known LPs, i.e., surfactins, bacillomycin Ls (iturin family), and fengycins, but also produces a new family of LP called locillomycins. The genome of B. subtilis 916 contains four nonribosomal peptide synthase (NRPS) gene clusters, srf, bmy, fen, and loc, which are responsible for the biosynthesis of surfactins, bacillomycin Ls, fengycins, and locillomycins, respectively. By studying B. subtilis 916 mutants lacking production of one, two, or three LPs, we attempted to unveil the connections between LPs and phenotypic features. We demonstrated that bacillomycin Ls and fengycins contribute mainly to antifungal activity. Although surfactins have weak antifungal activity in vitro, the strain mutated in srfAA had significantly decreased antifungal activity. This may be due to the impaired productions of fengycins and bacillomycin Ls. We also found that the disruption of any LP gene cluster other than fen resulted in a change in colony morphology. While surfactins and bacillomycin Ls play very important roles in hemolytic activity, swarming motility, and biofilm formation, the fengycins and locillomycins had little influence on these phenotypic features. In conclusion, B. subtilis 916 coproduces four families of LPs which contribute to the phenotypic features of B. subtilis 916 in an intricate way.

Indexed as

Multigene FamilyAntibiosisAntifungal AgentsBacillus subtilisBiofilmsDNA, BacterialHemolysisLipopeptidesLocomotionMolecular Sequence DataMutationPeptides, CyclicPeptide SynthasesSequence Analysis, DNAAntifungal AgentsDNA, BacterialLipopeptidesnon-ribosomal peptide synthasePeptides, CyclicPeptide Synthases

Identifiers

PMID25362061
PMCPMC4272749
OpenAlexW2044864356

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.