ArticlePloS one2014
Association mapping for important agronomic traits in core collection of rice (Oryza sativa L.) with SSR markers.
Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.
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Who cites it
37 citing papers in PubMed.
- Haplotype-based multi-locus genome-wide association study reveals genomic regions associated with reproductive stage high temperature stress tolerance in rice.Plant molecular biology · 2026Article
- Genetic Diversity and Population Structure of Maize (Plants (Basel, Switzerland) · 2024Article
- Genetic Diversity and Association Mapping of Grain-Size Traits in Rice Landraces from the Honghe Hani Rice Terraces System in Yunnan Province.Plants (Basel, Switzerland) · 2023Article
- Genome-wide association studies for a comprehensive understanding of the genetic architecture of culm strength and yield traits in rice.Frontiers in plant science · 2023Article
- Phenotypic and Genotypic screening of fifty-two rice (Oryza sativa L.) genotypes for desirable cultivars against blast disease.PloS one · 2023Article
- SSR-based genome-wide association study in turkish durum wheat germplasms revealed novel QTL of accumulated platinum.Molecular biology reports · 2022Article
- Detection of QTLs for Plant Height Architecture Traits in Rice (Plants (Basel, Switzerland) · 2022Article
- Association analysis, genetic diversity and population structure of barley (Hordeum vulgare L.) under heat stress conditions using SSR and ISSR markers linked to primary and secondary metabolites.Molecular biology reports · 2021Article
- Genome-Wide Association Study Reveals Marker-Trait Associations for Early Vegetative Stage Salinity Tolerance in Rice.Plants (Basel, Switzerland) · 2021Article
- Candidate genes and SNPs associated with stomatal conductance under drought stress in Vitis.BMC plant biology · 2021Article
- Genome-Wide Association Mapping of Mixed Linkage (1,3;1,4)-β-Glucan and Starch Contents in Rice Whole Grain.Frontiers in plant science · 2021Article
- Identification of Genetic Loci Associated With Crude Protein Content and Fiber Composition in Alfalfa (Frontiers in plant science · 2021Article
- Designing a Mini-Core Collection Effectively Representing 3004 Diverse Rice Accessions.Plant communications · 2020Article
- Insights into nitrogen fixing traits and population structure analyses in cowpea (Physiology and molecular biology of plants : an international journal of functional plant biology · 2020Article
- Article
- Detecting CSSLs and yield QTLs with additive, epistatic and QTL×environment interaction effects from Oryza sativa × O. nivara IRGC81832 cross.Scientific reports · 2020Article
- Association mapping for3 Biotech · 2020Article
- Genome-Wide Association Study Reveals Novel Marker-Trait Associations (MTAs) Governing the Localization of Fe and Zn in the Rice Grain.Frontiers in genetics · 2020Article
- Mining candidate gene for rice aluminum tolerance through genome wide association study and transcriptomic analysis.BMC plant biology · 2019Article
- Comparative transcriptome analysis reveals higher expression of stress and defense responsive genes in dwarf soybeans obtained from the crossing of G. max and G. soja.Genes & genomics · 2019Article
Corrections and comments
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Authors and funding
5 authors.
Funding
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Abstract
Mining elite genes within rice landraces is of importance for the improvement of cultivated rice. An association mapping for 12 agronomic traits was carried out using a core collection of rice consisting of 150 landraces (Panel 1) with 274 simple sequence repeat (SSR) markers, and the mapping results were further verified using a Chinese national rice micro-core collection (Panel 2) and a collection from a global molecular breeding program (Panel 3). Our results showed that (1) 76 significant (P<0.05) trait-marker associations were detected using mixed linear model (MLM) within Panel 1 in two years, among which 32% were identical with previously mapped QTLs, and 11 significant associations had >10% explained ratio of genetic variation; (2) A total of seven aforementioned trait-marker associations were verified within Panel 2 and 3 when using a general linear model (GLM) and 55 SSR markers of the 76 significant trait-marker associations. However, no significant trait-marker association was found to be identical within three panels when using the MLM model; (3) several desirable alleles of the loci which showed significant trait-marker associations were identified. The research provided important information for further mining these elite genes within rice landraces and using them for rice breeding.
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