Evidence map›Paper›PMID 25360421›Full record

ArticleFrontiers in cellular and infection microbiology2014

Generation and screening of a comprehensive Mycobacterium avium subsp. paratuberculosis transposon mutant bank.

Govardhan Rathnaiah, Elise A Lamont, N Beth Harris, Robert J Fenton, Denise K Zinniel, Xiaofei Liu, Josh Sotos, Zhengyu Feng, Ayala Livneh-Kol, Nahum Y Shpigel and 3 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in cellular and infection microbiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Review
  2. Review
  3. Vaccines · 2023
    Article
  4. Identification of essential genes inFrontiers in microbiology · 2022
    Article
  5. Article
  6. Pathogenesis, Molecular Genetics, and Genomics ofFrontiers in veterinary science · 2017
    Review
  7. Controlling Johne's disease: vaccination is the way forward.Frontiers in cellular and infection microbiology · 2015
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Govardhan RathnaiahSchool of Veterinary Medicine and Biomedical Sciences, University of Nebraska Lincoln, NE, USA.
Elise A LamontDepartment of Veterinary Population Medicine, University of Minnesota, St. Paul MN, USA.
N Beth HarrisSchool of Veterinary Medicine and Biomedical Sciences, University of Nebraska Lincoln, NE, USA.
Robert J FentonSchool of Veterinary Medicine and Biomedical Sciences, University of Nebraska Lincoln, NE, USA.
Denise K ZinnielSchool of Veterinary Medicine and Biomedical Sciences, University of Nebraska Lincoln, NE, USA.
Xiaofei LiuSchool of Veterinary Medicine and Biomedical Sciences, University of Nebraska Lincoln, NE, USA.
Josh SotosSchool of Veterinary Medicine, University of Wisconsin Madison, WI, USA.
Zhengyu FengSchool of Veterinary Medicine and Biomedical Sciences, University of Nebraska Lincoln, NE, USA.
Ayala Livneh-KolThe Koret School of Veterinary Medicine, The Hebrew University of Jerusalem Rehovot, Israel.
Nahum Y ShpigelThe Koret School of Veterinary Medicine, The Hebrew University of Jerusalem Rehovot, Israel.
Charles J CzuprynskiSchool of Veterinary Medicine, University of Wisconsin Madison, WI, USA.
Srinand SreevatsanDepartment of Veterinary Population Medicine, University of Minnesota, St. Paul MN, USA.
Raúl G BarlettaSchool of Veterinary Medicine and Biomedical Sciences, University of Nebraska Lincoln, NE, USA.
University of Nebraska–Lincoln · USHebrew University of Jerusalem · ILUniversity of Minnesota · USUniversity of Wisconsin–Madison · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Mycobacterium avium subsp. paratuberculosis (MAP) is the etiologic agent of Johne's Disease in ruminants. This enteritis has significant economic impact and worldwide distribution. Vaccination is one of the most cost effective infectious disease control measures. Unfortunately, current vaccines reduce clinical disease and shedding, but are of limited efficacy and do not provide long-term protective immunity. Several strategies have been followed to mine the MAP genome for virulence determinants that could be applied to vaccine and diagnostic assay development. In this study, a comprehensive mutant bank of 13,536 MAP K-10 Tn5367 mutants (P > 95%) was constructed and screened in vitro for phenotypes related to virulence. This strategy was designated to maximize identification of genes important to MAP pathogenesis without relying on studies of other mycobacterial species that may not translate into similar effects in MAP. This bank was screened for mutants with colony morphology alterations, susceptibility to D-cycloserine, impairment in siderophore production or secretion, reduced cell association, and decreased biofilm and clump formation. Mutants with interesting phenotypes were analyzed by PCR, Southern blotting and DNA sequencing to determine transposon insertion sites. These insertion sites mapped upstream from the MAP1152-MAP1156 cluster, internal to either the Mod operon gene MAP1566 or within the coding sequence of lsr2, and several intergenic regions. Growth curves in broth cultures, invasion assays and kinetics of survival and replication in primary bovine macrophages were also determined. The ability of vectors carrying Tn5370 to generate stable MAP mutants was also investigated.

Indexed as

Biological Specimen BanksDNA, BacterialDNA Transposable ElementsMutationAnimalsCattleCycloserineMacrophagesMicrobial Sensitivity TestsMicrobial ViabilityMutagenesis, InsertionalMycobacterium avium subsp. paratuberculosisParatuberculosisPhenotypeCycloserineDNA, BacterialDNA Transposable Elementsbovine macrophagesJohne's Diseasemutant bankMycobacterium paratuberculosistransposon

Identifiers

PMID25360421
PMCPMC4197770
OpenAlexW2042967810

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.