Evidence map›Paper›PMID 25359991›Full record

ArticleBlood2014

Activation of lymphoma-associated MyD88 mutations via allostery-induced TIR-domain oligomerization.

Monika Avbelj, Olaf-Oliver Wolz, Ota Fekonja, Mojca Benčina, Matej Repič, Janez Mavri, Jens Krüger, Charlotta Schärfe, Magno Delmiro Garcia, Gabriela Panter and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed, 70 citations in OpenAlex.

  1. Review
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  9. International journal of molecular sciences · 2022
    Review
  10. Mechanism of MyD88S mediated signal termination.Cell communication and signaling : CCS · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Absence of Non-Canonical, InhibitoryFrontiers in immunology · 2021
    Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Monika AvbeljDepartment of Biotechnology, National Institute of Chemistry, Ljubljana, Slovenia; Centre of Excellence EN-FIST, Ljubljana, Slovenia;
Olaf-Oliver WolzDepartment of Immunology, University of Tübingen, Tübingen, Germany;
Ota FekonjaDepartment of Biotechnology, National Institute of Chemistry, Ljubljana, Slovenia;
Mojca BenčinaDepartment of Biotechnology, National Institute of Chemistry, Ljubljana, Slovenia; Centre of Excellence EN-FIST, Ljubljana, Slovenia;
Matej RepičLaboratory for Biocomputing and Bioinformatics, National Institute of Chemistry, Ljubljana, Slovenia; and.
Janez MavriLaboratory for Biocomputing and Bioinformatics, National Institute of Chemistry, Ljubljana, Slovenia; and.
Jens KrügerCenter for Bioinformatics Tübingen, University of Tübingen, Tübingen, Germany.
Charlotta SchärfeCenter for Bioinformatics Tübingen, University of Tübingen, Tübingen, Germany.
Magno Delmiro GarciaDepartment of Immunology, University of Tübingen, Tübingen, Germany;
Gabriela PanterDepartment of Biotechnology, National Institute of Chemistry, Ljubljana, Slovenia; Centre of Excellence EN-FIST, Ljubljana, Slovenia;
Oliver KohlbacherCenter for Bioinformatics Tübingen, University of Tübingen, Tübingen, Germany.
Alexander N R WeberDepartment of Immunology, University of Tübingen, Tübingen, Germany;
Roman JeralaDepartment of Biotechnology, National Institute of Chemistry, Ljubljana, Slovenia; Centre of Excellence EN-FIST, Ljubljana, Slovenia;
University of Tübingen · DENational Institute of Chemistry · SIEN-FIST Centre of Excellence (Slovenia) · SIBernstein Center for Computational Neuroscience Tübingen · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Myeloid differentiation 88 (MyD88) is the key signaling adapter of Toll-like and interleukin-1 receptors. Recurrent lymphoma-associated mutations, particularly Leu265Pro (L265P), within the MyD88 Toll/interleukin-1 receptor (TIR) domain sustain lymphoma cell survival due to constitutive nuclear factor κB signaling. We found that mutated TIR domains displayed an intrinsic propensity for augmented oligomerization and spontaneous formation of cytosolic Myddosome aggregates in lymphoma cell lines, mimicking the effect of dimerized TIR domains. Blocking of MyD88 oligomerization induced apoptosis. The L265P TIR domain can recruit the endogenous wild-type MyD88 for oligomer formation and hyperactivity. Molecular dynamics simulations and analysis of additional mutations suggest that constitutive activity is caused by allosteric oligomerization.

Indexed as

MutationAllosteric SiteCell Line, TumorHEK293 CellsHeterozygoteHumansInflammationLuminescenceLymphomaMicroscopy, ConfocalMolecular Dynamics SimulationMyeloid Differentiation Factor 88PhenotypePolymerase Chain ReactionProtein Structure, TertiaryReceptors, Interleukin-1MYD88 protein, humanMyeloid Differentiation Factor 88Receptors, Interleukin-1RNA, Small Interfering

Identifiers

PMID25359991
PMCPMC4282153
OpenAlexW2068935056

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.