Evidence map›Paper›PMID 25359211›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2014

Bap1 is essential for kidney function and cooperates with Vhl in renal tumorigenesis.

Shan-Shan Wang, Yi-Feng Gu, Nicholas Wolff, Karoliina Stefanius, Alana Christie, Anwesha Dey, Robert E Hammer, Xian-Jin Xie, Dinesh Rakheja, Ivan Pedrosa and 4 more

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 88 papers.

0numbers the graph read from it
0cells of the map it votes in
88citing papers in PubMed
7.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

88 citing papers in PubMed, 147 citations in OpenAlex.

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  11. Toward a CRISPR-based mouse model ofProceedings of the National Academy of Sciences of the United States of America · 2024
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  18. BAP1 is a novel regulator of HIF-1α.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
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  20. Review

28 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Shan-Shan WangHematology-Oncology Division, Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, TX 75390; Departments of Developmental Biology, Kidney Cancer Program, Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX 75390;
Yi-Feng GuHematology-Oncology Division, Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, TX 75390; Departments of Developmental Biology, Kidney Cancer Program, Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX 75390;
Nicholas WolffHematology-Oncology Division, Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, TX 75390; Departments of Developmental Biology, Kidney Cancer Program, Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX 75390;
Karoliina StefaniusHematology-Oncology Division, Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, TX 75390; Departments of Developmental Biology, Kidney Cancer Program, Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX 75390;
Alana ChristieKidney Cancer Program, Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX 75390;
Anwesha DeyDepartment of Molecular Oncology, Genentech, South San Francisco, CA 94080.
Robert E HammerBiochemistry.
Xian-Jin XieKidney Cancer Program, Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX 75390;
Dinesh RakhejaKidney Cancer Program, Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX 75390; Pathology, Pediatrics.
Ivan PedrosaKidney Cancer Program, Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX 75390; Radiology, and Advanced Imaging Research Center, University of Texas Southwestern Medical Center, Dallas, TX 75390; and.
Thomas CarrollInternal Medicine (Nephrology) and Molecular Biology, University of Texas Southwestern Medical Center, Dallas, TX 75390;
Renée M McKayDepartments of Developmental Biology, Kidney Cancer Program, Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX 75390;
Payal KapurKidney Cancer Program, Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX 75390; Pathology, payal.kapur@utsouthwestern.edu james.brugarolas@utsouthwestern.edu.
James BrugarolasHematology-Oncology Division, Department of Internal Medicine, University of Texas Southwestern Medical Center, Dallas, TX 75390; Departments of Developmental Biology, Kidney Cancer Program, Simmons Comprehensive Cancer Center, University of Texas Southwestern Medical Center, Dallas, TX 75390; payal.kapur@utsouthwestern.edu james.brugarolas@utsouthwestern.edu.
The University of Texas Southwestern Medical Center · USNeuroDevelopment Center · USInstitute of Cytochemistry and Molecular Pharmacology · RUMolecular Oncology (United States) · USPediatrics and Genetics · US

Funding

NON-INVASIVE PHYSIOLOGIC PREDICTORS OF AGGRESSIVENESS IN RENAL CELL CARCINOMAR01CA154475 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI PEDROSA, IVAN · 2011 to 2024
$4.3M
Evaluation of the BAP1 tumor suppressor gene in renal cell carcinomaR01CA175754 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI BRUGAROLAS, JAMES · 2014 to 2018
$1.6M
The role of Wnt signaling in kidney tubule formationR01DK080004 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI CARROLL, THOMAS JOSEPH · 2008 to 2012
$1.6M
Interactions between the stroma and progenitor cells during kidney developmentR01DK095057 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI CARROLL, THOMAS JOSEPH · 2013 to 2016
$1.4M
Delineating a role for non-canonical wnt signaling in PKDR01DK090127 · NIDDK · UT SOUTHWESTERN MEDICAL CENTER · PI CARROLL, THOMAS JOSEPH · 2013 to 2016
$1.4M
NCI NIH HHS R01 CA154475NCI NIH HHS R01CA154475NCI NIH HHS R01 CA175754NCI NIH HHS R01CA175754NIDDK NIH HHS R01 DK080004NIDDK NIH HHS R01 DK090127NIDDK NIH HHS R01 DK095057
6 · The paper itself

Abstract

Why different species are predisposed to different tumor spectra is not well understood. In particular, whether the physical location of tumor suppressor genes relative to one another influences tumor predisposition is unknown. Renal cancer presents a unique opportunity to explore this question. Renal cell carcinoma (RCC) of clear-cell type (ccRCC), the most common type, begins with an intragenic mutation in the von Hippel-Lindau (VHL) gene and loss of 3p (where VHL is located). Chromosome 3p harbors several additional tumor suppressor genes, including BRCA1-associated protein-1 (BAP1). In the mouse, Vhl is on a different chromosome than Bap1. Thus, whereas loss of 3p in humans simultaneously deletes one copy of BAP1, loss of heterozygosity in the corresponding Vhl region in the mouse would not affect Bap1. To test the role of BAP1 in ccRCC development, we generated mice deficient for either Vhl or Vhl together with one allele of Bap1 in nephron progenitor cells. Six2-Cre;Vhl(F/F);Bap1(F/+) mice developed ccRCC, but Six2-Cre;Vhl(F/F) mice did not. Kidneys from Six2-Cre;Vhl(F/F);Bap1(F/+) mice resembled kidneys from humans with VHL syndrome, containing multiple lesions spanning from benign cysts to cystic and solid RCC. Although the tumors were small, they showed nuclear atypia and exhibited features of human ccRCC. These results provide an explanation for why VHL heterozygous humans, but not mice, develop ccRCC. They also explain why a mouse model of ccRCC has been lacking. More broadly, our data suggest that differences in tumor predisposition across species may be explained, at least in part, by differences in the location of two-hit tumor suppressor genes across the genome.

Indexed as

Disease Models, AnimalGenes, Tumor SuppressorAge of OnsetAllelesAnimalsCarcinoma, Renal CellCell LineageChromosome MappingFemaleGenes, ReporterGenes, SyntheticGenetic Predisposition to DiseaseHumansKidney Diseases, CysticKidney Failure, ChronicKidney NeoplasmsBAP1 protein, mouseTumor Suppressor ProteinsUbiquitin ThiolesteraseVHL protein, mouseVon Hippel-Lindau Tumor Suppressor ProteinBAP1kidney cancerkidney stem cellsSix2-CreVHL

Identifiers

PMID25359211
PMCPMC4246264
OpenAlexW2067441802

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.