Evidence map›Paper›PMID 25358898›Full record

ArticlePlant physiology2014

Virus-induced alterations in primary metabolism modulate susceptibility to Tobacco rattle virus in Arabidopsis.

Lourdes Fernández-Calvino, Sonia Osorio, M Luisa Hernández, Ignacio B Hamada, Francisco J del Toro, Livia Donaire, Agnés Yu, Regla Bustos, Alisdair R Fernie, José M Martínez-Rivas and 1 more

Open access · greenAbstract read
In one paragraph

Article in Plant physiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
6.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed, 67 citations in OpenAlex.

  1. Article
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  12. The3 Biotech · 2022
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  14. Water Deficit Improves Reproductive Fitness inPlants (Basel, Switzerland) · 2022
    Article
  15. Article
  16. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Lourdes Fernández-CalvinoCentro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, 28040 Madrid, Spain (L.F.-C., I.B.H., F.J.d.T., L.D., C.L.);Max Planck Institute for Molecular Plant Physiology, 14476 Postdam-Golm, Germany (S.O., A.R.F.);Instituto de la Grasa, Consejo Superior de Investigaciones Científicas, 41012 Seville, Spain (M.L.H., J.M.M.-R.);Unité de Recherche en Génomique Végétale, 91057 Evry cedex, France (A.Y.); andCentro de Biotecnología y Genómica de Plantas, Campus Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain (R.B.).
Sonia OsorioCentro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, 28040 Madrid, Spain (L.F.-C., I.B.H., F.J.d.T., L.D., C.L.);Max Planck Institute for Molecular Plant Physiology, 14476 Postdam-Golm, Germany (S.O., A.R.F.);Instituto de la Grasa, Consejo Superior de Investigaciones Científicas, 41012 Seville, Spain (M.L.H., J.M.M.-R.);Unité de Recherche en Génomique Végétale, 91057 Evry cedex, France (A.Y.); andCentro de Biotecnología y Genómica de Plantas, Campus Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain (R.B.).
M Luisa HernándezCentro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, 28040 Madrid, Spain (L.F.-C., I.B.H., F.J.d.T., L.D., C.L.);Max Planck Institute for Molecular Plant Physiology, 14476 Postdam-Golm, Germany (S.O., A.R.F.);Instituto de la Grasa, Consejo Superior de Investigaciones Científicas, 41012 Seville, Spain (M.L.H., J.M.M.-R.);Unité de Recherche en Génomique Végétale, 91057 Evry cedex, France (A.Y.); andCentro de Biotecnología y Genómica de Plantas, Campus Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain (R.B.).
Ignacio B HamadaCentro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, 28040 Madrid, Spain (L.F.-C., I.B.H., F.J.d.T., L.D., C.L.);Max Planck Institute for Molecular Plant Physiology, 14476 Postdam-Golm, Germany (S.O., A.R.F.);Instituto de la Grasa, Consejo Superior de Investigaciones Científicas, 41012 Seville, Spain (M.L.H., J.M.M.-R.);Unité de Recherche en Génomique Végétale, 91057 Evry cedex, France (A.Y.); andCentro de Biotecnología y Genómica de Plantas, Campus Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain (R.B.).
Francisco J del ToroCentro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, 28040 Madrid, Spain (L.F.-C., I.B.H., F.J.d.T., L.D., C.L.);Max Planck Institute for Molecular Plant Physiology, 14476 Postdam-Golm, Germany (S.O., A.R.F.);Instituto de la Grasa, Consejo Superior de Investigaciones Científicas, 41012 Seville, Spain (M.L.H., J.M.M.-R.);Unité de Recherche en Génomique Végétale, 91057 Evry cedex, France (A.Y.); andCentro de Biotecnología y Genómica de Plantas, Campus Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain (R.B.).
Livia DonaireCentro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, 28040 Madrid, Spain (L.F.-C., I.B.H., F.J.d.T., L.D., C.L.);Max Planck Institute for Molecular Plant Physiology, 14476 Postdam-Golm, Germany (S.O., A.R.F.);Instituto de la Grasa, Consejo Superior de Investigaciones Científicas, 41012 Seville, Spain (M.L.H., J.M.M.-R.);Unité de Recherche en Génomique Végétale, 91057 Evry cedex, France (A.Y.); andCentro de Biotecnología y Genómica de Plantas, Campus Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain (R.B.).
Agnés YuCentro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, 28040 Madrid, Spain (L.F.-C., I.B.H., F.J.d.T., L.D., C.L.);Max Planck Institute for Molecular Plant Physiology, 14476 Postdam-Golm, Germany (S.O., A.R.F.);Instituto de la Grasa, Consejo Superior de Investigaciones Científicas, 41012 Seville, Spain (M.L.H., J.M.M.-R.);Unité de Recherche en Génomique Végétale, 91057 Evry cedex, France (A.Y.); andCentro de Biotecnología y Genómica de Plantas, Campus Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain (R.B.).
Regla BustosCentro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, 28040 Madrid, Spain (L.F.-C., I.B.H., F.J.d.T., L.D., C.L.);Max Planck Institute for Molecular Plant Physiology, 14476 Postdam-Golm, Germany (S.O., A.R.F.);Instituto de la Grasa, Consejo Superior de Investigaciones Científicas, 41012 Seville, Spain (M.L.H., J.M.M.-R.);Unité de Recherche en Génomique Végétale, 91057 Evry cedex, France (A.Y.); andCentro de Biotecnología y Genómica de Plantas, Campus Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain (R.B.).
Alisdair R FernieCentro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, 28040 Madrid, Spain (L.F.-C., I.B.H., F.J.d.T., L.D., C.L.);Max Planck Institute for Molecular Plant Physiology, 14476 Postdam-Golm, Germany (S.O., A.R.F.);Instituto de la Grasa, Consejo Superior de Investigaciones Científicas, 41012 Seville, Spain (M.L.H., J.M.M.-R.);Unité de Recherche en Génomique Végétale, 91057 Evry cedex, France (A.Y.); andCentro de Biotecnología y Genómica de Plantas, Campus Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain (R.B.).
José M Martínez-RivasCentro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, 28040 Madrid, Spain (L.F.-C., I.B.H., F.J.d.T., L.D., C.L.);Max Planck Institute for Molecular Plant Physiology, 14476 Postdam-Golm, Germany (S.O., A.R.F.);Instituto de la Grasa, Consejo Superior de Investigaciones Científicas, 41012 Seville, Spain (M.L.H., J.M.M.-R.);Unité de Recherche en Génomique Végétale, 91057 Evry cedex, France (A.Y.); andCentro de Biotecnología y Genómica de Plantas, Campus Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain (R.B.).
César LlaveCentro de Investigaciones Biológicas, Consejo Superior de Investigaciones Científicas, 28040 Madrid, Spain (L.F.-C., I.B.H., F.J.d.T., L.D., C.L.);Max Planck Institute for Molecular Plant Physiology, 14476 Postdam-Golm, Germany (S.O., A.R.F.);Instituto de la Grasa, Consejo Superior de Investigaciones Científicas, 41012 Seville, Spain (M.L.H., J.M.M.-R.);Unité de Recherche en Génomique Végétale, 91057 Evry cedex, France (A.Y.); andCentro de Biotecnología y Genómica de Plantas, Campus Montegancedo, Pozuelo de Alarcón, 28223 Madrid, Spain (R.B.) cesarllave@cib.csic.es.
Max Planck Innovation · DEMax Planck Society · DEConsejo Superior de Investigaciones Científicas · ESInstituto de la Grasa · ES

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

During compatible virus infections, plants respond by reprogramming gene expression and metabolite content. While gene expression studies are profuse, our knowledge of the metabolic changes that occur in the presence of the virus is limited. Here, we combine gene expression and metabolite profiling in Arabidopsis (Arabidopsis thaliana) infected with Tobacco rattle virus (TRV) in order to investigate the influence of primary metabolism on virus infection. Our results revealed that primary metabolism is reconfigured in many ways during TRV infection, as reflected by significant changes in the levels of sugars and amino acids. Multivariate data analysis revealed that these alterations were particularly conspicuous at the time points of maximal accumulation of TRV, although infection time was the dominant source of variance during the process. Furthermore, TRV caused changes in lipid and fatty acid composition in infected leaves. We found that several Arabidopsis mutants deficient in branched-chain amino acid catabolism or fatty acid metabolism possessed altered susceptibility to TRV. Finally, we showed that increments in the putrescine content in TRV-infected plants correlated with enhanced tolerance to freezing stress in TRV-infected plants and that impairment of putrescine biosynthesis promoted virus multiplication. Our results thus provide an interesting overview for a better understanding of the relationship between primary metabolism and virus infection.

Indexed as

Gene Expression Regulation, PlantAmino AcidsAmino Acids, Branched-ChainArabidopsisDisease SusceptibilityFatty AcidsGene Expression ProfilingLipid MetabolismLipidsOligonucleotide Array Sequence AnalysisPlant DiseasesPlant LeavesPlant VirusesPutrescineRNA VirusesVirus ReplicationAmino AcidsAmino Acids, Branched-ChainFatty AcidsLipidsPutrescine

Identifiers

PMID25358898
PMCPMC4256867
OpenAlexW2028942954

What OpenQuestion holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.