Evidence map›Paper›PMID 25358868›Full record

ArticleBMC medical genomics2014

Sleep quality, BDNF genotype and gene expression in individuals with chronic abdominal pain.

Swarnalatha Y Reddy, Nat A Rasmussen, Nicolaas H Fourie, Rebecca S Berger, Angela C Martino, Jessica Gill, Ryan Longchamps, Xiao Min Wang, Margaret M Heitkemper, Wendy A Henderson

Registry-linked trialOpen access · goldAbstract readComparative Study
In one paragraph

Article in BMC medical genomics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT00824941 (Brain-Gut Interactions in Overweight and Normal Weight Patients With Chronic Abdominal Pain), which is not on this map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.9field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT00824941 terminatednot on this map

Brain-Gut Interactions in Overweight and Normal Weight Patients With Chronic Abdominal Pain

TypeobservationalSponsorNational Institute of Nursing Research (NINR)Ran2009 to 2019Enrolled132ConditionsObesity, Stress, Irritable Bowel Syndrome, Women
3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 19 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Interactions ofFrontiers in neuroscience · 2018
    Article
  6. Review
  7. Review
  8. Article
  9. Article
  10. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Swarnalatha Y Reddy
Nat A Rasmussen
Nicolaas H Fourie
Rebecca S Berger
Angela C Martino
Jessica Gill
Ryan Longchamps
Xiao Min Wang
Margaret M Heitkemper
Wendy A Henderson
National Institutes of Health · USNational Institute of Nursing Research · USSeattle University · US

Funding

Symptom Distress Mechanisms in Digestive DisordersZIANR000018 · NINR · NATIONAL INSTITUTE OF NURSING RESEARCH · PI HENDERSON, WENDY · 2009 to 2019
$5.2M
Traumatic Brain Injury and Sleep Disorders in Military PersonnelZIANR000027 · NINR · NATIONAL INSTITUTE OF NURSING RESEARCH · PI GILL, JESSICA · 2013 to 2021
$4.8M
Intramural NIH HHS ZIA NR000018PHS HHS 1ZIANR000018-01-04
6 · The paper itself

Abstract

backgroundSleep quality and genetics may contribute to the etiology of gastrointestinal (GI) symptoms. Individuals with impaired sleep often have a number of associated symptoms including chronic abdominal pain (CAP). The current study examined the interactions of brain-derived neurotrophic factor (BDNF) genotype with sleep quality in persons with CAP and healthy controls. In addition, associations among sleep quality, BDNF genotype, and gene expression were explored in the participants.

methodsData were collected on 59 participants (46% male, 61% White, 26.9 ± 6.6 years; CAP (n=19) and healthy controls (n=40)). Participants with CAP reported poorer sleep quality compared to healthy controls. BDNF genotype, categorized as Val/Val homozygotes versus the Met carriers.

resultsMicroarray analysis found twenty-four differentially expressed genes by a two-fold magnitude in participants with poor sleep quality compared to good sleep quality, and seven differentially expressed genes comparing CAP to healthy control. Three specific genes in the pain group overlap with sleep quality, including insulin-like growth factor 1 (IGF1), spermatogenesis associated serine-rich 2-like (SPATS2L), and immunoglobulin heavy constant gamma 1 or mu (IGHG1/// IGHM). BDNF was shown to have an interaction effect with GI and sleep symptoms.

conclusionsParticipants with CAP reported poor sleep quality compared to healthy controls. The role of the BDNF Met allele on differential gene expression was not distinct as main factor, but impacted interactions with sleep quality and CAP. Down-regulation of IGF1, SPATS2L, and IGHG1 expression may be related to the etiology of poor sleep quality and CAP.

trial registrationClinicaltrial.gov # NCT00824941.

Indexed as

Gene Expression ProfilingAbdominal PainAdultBiomarkersBrain-Derived Neurotrophic FactorCarrier ProteinsCase-Control StudiesChronic DiseaseFemaleGenotypeHumansInsulin-Like Growth Factor IMaleOligonucleotide Array Sequence AnalysisPolymorphism, GeneticProteinsBDNF protein, humanBiomarkersBrain-Derived Neurotrophic FactorCarrier ProteinsIGF1 protein, humanInsulin-Like Growth Factor Iprolactin-binding proteinProteinsRNA, MessengerSPATS2L protein, human

Identifiers

PMID25358868
PMCPMC4226913
OpenAlexW2015768078

What OpenQuestion holds

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LicenceCC BY
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Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.