Evidence map›Paper›PMID 25356958›Full record

ArticleBiochemistry2014

Biochemical, mechanistic, and spectroscopic characterization of metallo-β-lactamase VIM-2.

Mahesh Aitha, Amy R Marts, Alex Bergstrom, Abraham Jon Møller, Lindsay Moritz, Lucien Turner, Jay C Nix, Robert A Bonomo, Richard C Page, David L Tierney and 1 more

Abstract read
In one paragraph

Article in Biochemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 36 papers.

0numbers the graph read from it
0cells of the map it votes in
36citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

36 citing papers in PubMed.

  1. Article
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  7. Review
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  13. An integrated biophysical approach to discovering mechanisms of NDM-1 inhibition for several thiol-containing drugs.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2020
    Article
  14. Review
  15. Monitoring protein-metal binding byRSC medicinal chemistry · 2020
    Article
  16. Article
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  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Mahesh AithaDepartment of Chemistry and Biochemistry, Miami University , 650 East High Street, Oxford, Ohio 45056, United States.
Amy R Marts
Alex Bergstrom
Abraham Jon Møller
Lindsay Moritz
Lucien Turner
Jay C Nix
Robert A Bonomo
Richard C Page
David L Tierney
Michael W Crowder

Funding

Understanding ceftazidime resistance in SHV B-LactamasesR01AI063517 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI BONOMO, ROBERT A. · 2005 to 2023
$4.9M
A Mechanism-Based Approach to Metallo-beta-Lactamase InhibitionR01AI100560 · NIAID · CASE WESTERN RESERVE UNIVERSITY · PI BONOMO, ROBERT A., SPENCER, JAMES · 2012 to 2022
$4.4M
Time-dependent structural studies on dinuclear metal ion containing enzymesR15GM093987 · NIGMS · MIAMI UNIVERSITY OXFORD · PI CROWDER, MICHAEL W, TIERNEY, DAVID L · 2010 to 2010
$426k
NIAID NIH HHS R01 AI063517NIAID NIH HHS R01 AI100560NIGMS NIH HHS R15 GM093987
6 · The paper itself

Abstract

This study examines metal binding to metallo-β-lactamase VIM-2, demonstrating the first successful preparation of a Co(II)-substituted VIM-2 analogue. Spectroscopic studies of the half- and fully metal loaded enzymes show that both Zn(II) and Co(II) bind cooperatively, where the major species present, regardless of stoichiometry, are apo- and di-Zn (or di-Co) enzymes. We determined the di-Zn VIM-2 structure to a resolution of 1.55 Å, and this structure supports results from spectroscopic studies. Kinetics, both steady-state and pre-steady-state, show that VIM-2 utilizes a mechanism that proceeds through a very short-lived anionic intermediate when chromacef is used as the substrate. Comparison with other B1 enzymes shows that those that bind Zn(II) cooperatively are better poised to protonate the intermediate on its formation, compared to those that bind Zn(II) non-cooperatively, which uniformly build up substantial amounts of the intermediate.

Indexed as

beta-LactamasesBinding SitesCloning, MolecularCrystallography, X-RayEscherichia coliModels, MolecularPseudomonas aeruginosaSpectrum AnalysisUp-RegulationZincbeta-lactamase bla(vim-2)beta-LactamasesZinc

Identifiers

PMID25356958
PMCPMC4245990

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.