Evidence map›Paper›PMID 25356765›Full record

ArticlePLoS genetics2014

Foxf genes integrate tbx5 and hedgehog pathways in the second heart field for cardiac septation.

Andrew D Hoffmann, Xinan Holly Yang, Ozanna Burnicka-Turek, Joshua D Bosman, Xiaomeng Ren, Jeffrey D Steimle, Steven A Vokes, Andrew P McMahon, Vladimir V Kalinichenko, Ivan P Moskowitz

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 57 papers.

0numbers the graph read from it
0cells of the map it votes in
57citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

57 citing papers in PubMed, 99 citations in OpenAlex.

  1. Article
  2. CoordinatedeLife · 2025
    Article
  3. Article
  4. Article
  5. Article
  6. The second heart field: the first 20 years.Mammalian genome : official journal of the International Mammalian Genome Society · 2023
    Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Therapeutic Potential of Endothelial Progenitor Cells in Pulmonary Diseases.American journal of respiratory cell and molecular biology · 2021
    Review
  12. Tbx5 driveseLife · 2021
    Article
  13. Article
  14. Article
  15. Article
  16. The Mesenchymal Cap of the Atrial Septum and Atrial and Atrioventricular Septation.Journal of cardiovascular development and disease · 2020
    Review
  17. Article
  18. Genome Editing for Rare Diseases.Current stem cell reports · 2020
    Article
  19. eLife · 2020
    Article
  20. Hedgehog-FGF signaling axis patterns anterior mesoderm during gastrulation.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Andrew D HoffmannDepartments of Pediatrics, Pathology, and Human Genetics, The University of Chicago, Chicago, Illinois, United States of America.
Xinan Holly YangDepartments of Pediatrics, Pathology, and Human Genetics, The University of Chicago, Chicago, Illinois, United States of America.
Ozanna Burnicka-TurekDepartments of Pediatrics, Pathology, and Human Genetics, The University of Chicago, Chicago, Illinois, United States of America.
Joshua D BosmanDepartments of Pediatrics, Pathology, and Human Genetics, The University of Chicago, Chicago, Illinois, United States of America.
Xiaomeng RenDepartment of Pediatrics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, United States of America.
Jeffrey D SteimleDepartments of Pediatrics, Pathology, and Human Genetics, The University of Chicago, Chicago, Illinois, United States of America.
Steven A VokesDepartment of Molecular Biosciences, Institute for Cellular and Molecular Biology, University of Texas, Austin, Texas, United States of America.
Andrew P McMahonDepartment of Regenerative Medicine and Stem Cell Biology, University of Southern California, Los Angeles, California, United States of America.
Vladimir V KalinichenkoDepartment of Pediatrics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio, United States of America.
Ivan P MoskowitzDepartments of Pediatrics, Pathology, and Human Genetics, The University of Chicago, Chicago, Illinois, United States of America.
University of Chicago · USCincinnati Children's Hospital Medical Center · USThe University of Texas at Austin · USUniversity of Southern California · US

Funding

Molecular And Cellular Biology Training ProgramT32GM007183 · NIGMS · UNIVERSITY OF CHICAGO · PI GLICK, BENJAMIN S, RICE, PHOEBE A · 1985 to 2021
$23.9M
Re-Engineering Translational Research at the University of ChicagoUL1TR000430 · NCATS · UNIVERSITY OF CHICAGO · PI SOLWAY, JULIAN · 2012 to 2016
$20.2M
MULTIDISCIPLINARY CARDIAC SCIENCEST32HL007381 · NHLBI · UNIVERSITY OF CHICAGO · PI JEANNE M DECARA, Yoav Gilad · 1985 to 2026
$12.5M
Beagle: A Supercomputer for Computational Biology, Simulation, and Data AnalysisS10RR029030 · NCRR · UNIVERSITY OF CHICAGO · PI FOSTER, IAN · 2010 to 2010
$7.0M
Genetic and Molecular Analysis of Mutants with Congenital Heart DefectsR01HL092153 · NHLBI · UNIVERSITY OF CHICAGO · PI MOSKOWITZ, IVAN PAUL · 2009 to 2017
$4.5M
Modeling MicroRNA-Target Functional Networks for Acute Myeloid Leukemia PrognosisR21CA167305 · NCI · UNIVERSITY OF CHICAGO · PI YANG, XINAN HOLLY · 2013 to 2014
$370k
NCATS NIH HHS UL1 TR000430NCI NIH HHS R21 CA167305NCRR NIH HHS S10 RR029030NHLBI NIH HHS R01 HL092153NHLBI NIH HHS T32 HL007381NIGMS NIH HHS T32 GM007183
6 · The paper itself

Abstract

The Second Heart Field (SHF) has been implicated in several forms of congenital heart disease (CHD), including atrioventricular septal defects (AVSDs). Identifying the SHF gene regulatory networks required for atrioventricular septation is therefore an essential goal for understanding the molecular basis of AVSDs. We defined a SHF Hedgehog-dependent gene regulatory network using whole genome transcriptional profiling and GLI-chromatin interaction studies. The Forkhead box transcription factors Foxf1a and Foxf2 were identified as SHF Hedgehog targets. Compound haploinsufficiency for Foxf1a and Foxf2 caused atrioventricular septal defects, demonstrating the biological relevance of this regulatory network. We identified a Foxf1a cis-regulatory element that bound the Hedgehog transcriptional regulators GLI1 and GLI3 and the T-box transcription factor TBX5 in vivo. GLI1 and TBX5 synergistically activated transcription from this cis-regulatory element in vitro. This enhancer drove reproducible expression in vivo in the posterior SHF, the only region where Gli1 and Tbx5 expression overlaps. Our findings implicate Foxf genes in atrioventricular septation, describe the molecular underpinnings of the genetic interaction between Hedgehog signaling and Tbx5, and establish a molecular model for the selection of the SHF gene regulatory network for cardiac septation.

Indexed as

AnimalsChromatinForkhead Transcription FactorsGene Expression Regulation, DevelopmentalGene Regulatory NetworksHeartHeart Septal DefectsHedgehog ProteinsHumansKruppel-Like Transcription FactorsMiceNerve Tissue ProteinsSignal TransductionT-Box Domain ProteinsTranscription FactorsZinc Finger Protein GLI1ChromatinForkhead Transcription FactorsFoxf1 protein, mouseFoxf2 protein, mouseGLI1 protein, humanGLI3 protein, humanHedgehog ProteinsKruppel-Like Transcription FactorsNerve Tissue ProteinsT-Box Domain ProteinsT-box transcription factor 5Transcription FactorsZinc Finger Protein GLI1Zinc Finger Protein Gli3

Identifiers

PMID25356765
PMCPMC4214600
OpenAlexW2025559562

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.