Evidence map›Paper›PMID 25356720›Full record

ArticleJournal of medicinal chemistry2014

Structural analysis of a novel small molecule ligand bound to the CXCL12 chemokine.

Emmanuel W Smith, Yan Liu, Anthony E Getschman, Francis C Peterson, Joshua J Ziarek, Rongshi Li, Brian F Volkman, Yu Chen

Abstract read
In one paragraph

Article in Journal of medicinal chemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Chemokines in COPD: From Implication to Therapeutic Use.International journal of molecular sciences · 2019
    Review
  6. Chemokines from a Structural Perspective.International journal of molecular sciences · 2017
    Review
  7. CCR7 Sulfotyrosine Enhances CCL21 Binding.International journal of molecular sciences · 2017
    Article
  8. Review
  9. Review
  10. Mechanisms of Regulation of the Chemokine-Receptor Network.International journal of molecular sciences · 2017
    Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Emmanuel W SmithDepartment of Molecular Medicine, University of South Florida , 12901 Bruce B. Downs Boulevard, Tampa, Florida 33612, United States.
Yan Liu
Anthony E Getschman
Francis C Peterson
Joshua J Ziarek
Rongshi Li
Brian F Volkman
Yu Chen
Medical College of Wisconsin · USUniversity of Nebraska Medical Center · USUniversity of South Florida · US

Funding

Structural Basis for Chemokine FunctionR01AI058072 · NIAID · MEDICAL COLLEGE OF WISCONSIN · PI VOLKMAN, BRIAN F · 2004 to 2019
$4.1M
Sulfotyrosine-guided discovery of small molecule chemokine inhibitorsR01GM097381 · NIGMS · MEDICAL COLLEGE OF WISCONSIN · PI VOLKMAN, BRIAN F · 2011 to 2021
$2.9M
Structural Basis for Chemokine FunctionR37AI058072 · NIAID · MEDICAL COLLEGE OF WISCONSIN · PI Brian F Volkman · 2020 to 2026
$2.8M
Targeting the CXCL12/CXCR4 Axis toward the Therapy of Metastatic CancersR01CA173056 · NCI · UNIVERSITY OF NEBRASKA MEDICAL CENTER · PI LI, RONGSHI · 2013 to 2015
$1.0M
NCI NIH HHS CA173056NCI NIH HHS R01 CA173056NIAID NIH HHS AI058072NIAID NIH HHS R01 AI058072NIAID NIH HHS R37 AI058072NIGMS NIH HHS GM097381NIGMS NIH HHS R01 GM097381
6 · The paper itself

Abstract

CXCL12 binds to CXCR4, promoting both chemotaxis of lymphocytes and metastasis of cancer cells. We previously identified small molecule ligands that bind CXCL12 and block CXCR4-mediated chemotaxis. We now report a 1.9 Å resolution X-ray structure of CXCL12 bound by such a molecule at a site normally bound by sY21 of CXCR4. The complex structure reveals binding hot spots for future inhibitor design and suggests a new approach to targeting CXCL12-CXCR4 signaling in drug discovery.

Indexed as

Antineoplastic AgentsBinding SitesChemokine CXCL12ChemotaxisCrystallography, X-RayDrug DesignHumansLigandsMagnetic Resonance SpectroscopyMolecular Docking SimulationProtein BindingProtein Structure, TertiaryReceptors, CXCR4Signal TransductionStructure-Activity RelationshipAntineoplastic AgentsChemokine CXCL12CXCL12 protein, humanCXCR4 protein, humanLigandsReceptors, CXCR4

Identifiers

PMID25356720
PMCPMC4255719
OpenAlexW1484793323

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.