Evidence map›Paper›PMID 25356590›Full record

ArticlePLoS genetics2014

Multifaceted genome control by Set1 Dependent and Independent of H3K4 methylation and the Set1C/COMPASS complex.

Irina V Mikheyeva, Patrick J R Grady, Fiona B Tamburini, David R Lorenz, Hugh P Cam

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 40 citations in OpenAlex.

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  8. A Role forCells · 2020
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  19. RNA Binding by Histone Methyltransferases Set1 and Set2.Molecular and cellular biology · 2017
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Irina V MikheyevaBiology Department, Boston College, Chestnut Hill, Massachusetts, United States of America.
Patrick J R GradyBiology Department, Boston College, Chestnut Hill, Massachusetts, United States of America.
Fiona B TamburiniBiology Department, Boston College, Chestnut Hill, Massachusetts, United States of America.
David R LorenzBiology Department, Boston College, Chestnut Hill, Massachusetts, United States of America.
Hugh P CamBiology Department, Boston College, Chestnut Hill, Massachusetts, United States of America.
Boston College · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Histone modifiers are critical regulators of chromatin-based processes in eukaryotes. The histone methyltransferase Set1, a component of the Set1C/COMPASS complex, catalyzes the methylation at lysine 4 of histone H3 (H3K4me), a hallmark of euchromatin. Here, we show that the fission yeast Schizosaccharomyces pombe Set1 utilizes distinct domain modules to regulate disparate classes of repetitive elements associated with euchromatin and heterochromatin via H3K4me-dependent and -independent pathways. Set1 employs its RNA-binding RRM2 and catalytic SET domains to repress Tf2 retrotransposons and pericentromeric repeats while relying on its H3K4me function to maintain transcriptional repression at the silent mating type (mat) locus and subtelomeric regions. These repressive functions of Set1 correlate with the requirement of Set1C components to maintain repression at the mat locus and subtelomeres while dispensing Set1C in repressing Tf2s and pericentromeric repeats. We show that the contributions of several Set1C subunits to the states of H3K4me diverge considerably from those of Saccharomyces cerevisiae orthologs. Moreover, unlike S. cerevisiae, the regulation of Set1 protein level is not coupled to the status of H3K4me or histone H2B ubiquitination by the HULC complex. Intriguingly, we uncover a genome organization role for Set1C and H3K4me in mediating the clustering of Tf2s into Tf bodies by antagonizing the acetyltransferase Mst1-mediated H3K4 acetylation. Our study provides unexpected insights into the regulatory intricacies of a highly conserved chromatin-modifying complex with diverse roles in genome control.

Indexed as

DNA MethylationEuchromatinGenome, FungalHistone DemethylasesHistone-Lysine N-MethyltransferaseHistonesIn Situ Hybridization, FluorescenceMultiprotein ComplexesProtein Structure, TertiarySchizosaccharomycesSchizosaccharomyces pombe ProteinsTranscription FactorsUbiquitinationEuchromatinHistone DemethylasesHistone-Lysine N-MethyltransferaseHistonesMultiprotein ComplexesSchizosaccharomyces pombe ProteinsSet1 protein, S pombeTranscription Factors

Identifiers

PMID25356590
PMCPMC4214589
OpenAlexW2037208343

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.