Evidence map›Paper›PMID 25356551›Full record

ArticlePloS one2014

Multiple NUCLEAR FACTOR Y transcription factors respond to abiotic stress in Brassica napus L.

Li Xu, Zhongyuan Lin, Qing Tao, Mingxiang Liang, Gengmao Zhao, Xiangzhen Yin, Ruixin Fu

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
5.6field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 48 citations in OpenAlex.

  1. Article
  2. Review
  3. Identification ofGenes · 2025
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  5. O-Glycosyltransferase GenePlants (Basel, Switzerland) · 2024
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  8. Overexpression of anFrontiers in plant science · 2022
    Article
  9. NF-YB family transcription factors inFrontiers in microbiology · 2022
    Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
  15. Genome-wide identification and co-expression network analysis of nuclear factor-Y in barley revealed potential functions in salt stress.Physiology and molecular biology of plants : an international journal of functional plant biology · 2019
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Li XuCollege of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China.
Zhongyuan LinCollege of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China; Jiangsu Key Lab of Marine Biology, Nanjing, China.
Qing TaoCollege of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China; Jiangsu Key Lab of Marine Biology, Nanjing, China.
Mingxiang LiangCollege of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China; Jiangsu Key Lab of Marine Biology, Nanjing, China.
Gengmao ZhaoCollege of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China; Jiangsu Key Lab of Marine Biology, Nanjing, China.
Xiangzhen YinCollege of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China; Jiangsu Key Lab of Marine Biology, Nanjing, China.
Ruixin FuCollege of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, China; Jiangsu Key Lab of Marine Biology, Nanjing, China.
Nanjing Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Members of the plant NUCLEAR FACTOR Y (NF-Y) family are composed of the NF-YA, NF-YB, and NF-YC subunits. In Brassica napus (canola), each of these subunits forms a multimember subfamily. Plant NF-Ys were reported to be involved in several abiotic stresses. In this study, we demonstrated that multiple members of thirty three BnNF-Ys responded rapidly to salinity, drought, or ABA treatments. Transcripts of five BnNF-YAs, seven BnNF-YBs, and two BnNF-YCs were up-regulated by salinity stress, whereas the expression of thirteen BnNF-YAs, ten BnNF-YBs, and four BnNF-YCs were induced by drought stress. Under NaCl treatments, the expression of one BnNF-YA10 and four NF-YBs (BnNF-YB3, BnNF-YB7, BnNF-YB10, and BnNF-YB14) were greatly increased. Under PEG treatments, the expression levels of four NF-YAs (BnNF-YA9, BnNF-YA10, BnNF-YA11, and BnNF-YA12) and five NF-YBs (BnNF-YB1, BnNF-YB8, BnNF-YB10, BnNF-YB13, and BnNF-YB14) were greatly induced. The expression profiles of 20 of the 27 salinity- or drought-induced BnNF-Ys were also affected by ABA treatment. The expression levels of six NF-YAs (BnNF-YA1, BnNF-YA7, BnNF-YA8, BnNF-YA9, BnNF-YA10, and BnNF-YA12) and seven BnNF-YB members (BnNF-YB2, BnNF-YB3, BnNF-YB7, BnNF-YB10, BnNF-YB11, BnNF-YB13, and BnNF-YB14) and two NF-YC members (BnNF-YC2 and BnNF-YC3) were greatly up-regulated by ABA treatments. Only a few BnNF-Ys were inhibited by the above three treatments. Several NF-Y subfamily members exhibited collinear expression patterns. The promoters of all stress-responsive BnNF-Ys harbored at least two types of stress-related cis-elements, such as ABRE, DRE, MYB, or MYC. The cis-element organization of BnNF-Ys was similar to that of Arabidopsis thaliana, and the promoter regions exhibited higher levels of nucleotide sequence identity with Brassica rapa than with Brassica oleracea. This work represents an entry point for investigating the roles of canola NF-Y proteins during abiotic stress responses and provides insight into the genetic evolution of Brassica NF-Ys.

Indexed as

Stress, PhysiologicalAbscisic AcidArabidopsis ProteinsBase SequenceBrassica napusCCAAT-Binding FactorDroughtsGene Expression Regulation, PlantGenes, PlantPhylogenyPlant LeavesPlant RootsResponse ElementsSalinitySequence Homology, Nucleic AcidAbscisic AcidArabidopsis ProteinsCCAAT-Binding Factornuclear factor Y

Identifiers

PMID25356551
PMCPMC4214726
OpenAlexW2068771090

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.