Evidence map›Paper›PMID 25356504›Full record

ArticleInternational journal of molecular sciences2014

Polymorphism of the DNA base excision repair genes in keratoconus.

Katarzyna A Wojcik, Ewelina Synowiec, Katarzyna Sobierajczyk, Justyna Izdebska, Janusz Blasiak, Jerzy Szaflik, Jacek P Szaflik

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 17 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Variation in DNA Base Excision Repair Genes in Fuchs Endothelial Corneal Dystrophy.Medical science monitor : international medical journal of experimental and clinical research · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Katarzyna A WojcikDepartment of Molecular Genetics, University of Lodz, Pomorska 141/143, 90-236 Lodz, Poland. kwojcik@biol.uni.lodz.pl.
Ewelina SynowiecDepartment of Molecular Genetics, University of Lodz, Pomorska 141/143, 90-236 Lodz, Poland. ewelinas@biol.uni.lodz.pl.
Katarzyna SobierajczykDepartment of Molecular Genetics, University of Lodz, Pomorska 141/143, 90-236 Lodz, Poland. katarzyna2781@wp.pl.
Justyna IzdebskaDepartment of Ophthalmology, Medical University of Warsaw, SPKSO Ophthalmic Hospital, Sierakowskiego 13, 03-709 Warsaw, Poland. justyna_izdebska@yahoo.es.
Janusz BlasiakDepartment of Molecular Genetics, University of Lodz, Pomorska 141/143, 90-236 Lodz, Poland. jblasiak@biol.uni.lodz.pl.
Jerzy SzaflikDepartment of Ophthalmology, Medical University of Warsaw, SPKSO Ophthalmic Hospital, Sierakowskiego 13, 03-709 Warsaw, Poland. szaflik@szaflik.pl.
Jacek P SzaflikDepartment of Ophthalmology, Medical University of Warsaw, SPKSO Ophthalmic Hospital, Sierakowskiego 13, 03-709 Warsaw, Poland. szaflik@ophthalmology.pl.
University of Łódź · PLMedical University of Warsaw · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Keratoconus (KC) is a degenerative corneal disorder for which the exact pathogenesis is not yet known. Oxidative stress is reported to be associated with this disease. The stress may damage corneal biomolecules, including DNA, and such damage is primarily removed by base excision repair (BER). Variation in genes encoding BER components may influence the effectiveness of corneal cells to cope with oxidative stress. In the present work we genotyped 5 polymorphisms of 4 BER genes in 284 patients and 353 controls. The A/A genotype of the c.-1370T>A polymorphism of the DNA polymerase γ (POLG) gene was associated with increased occurrence of KC, while the A/T genotype was associated with decreased occurrence of KC. The A/G genotype and the A allele of the c.1196A>G polymorphism of the X-ray repair cross-complementing group 1 (XRCC1) were associated with increased, and the G/G genotype and the G allele, with decreased KC occurrence. Also, the C/T and T as well as C/C genotypes and alleles of the c.580C>T polymorphism of the same gene displayed relationship with KC occurrence. Neither the g.46438521G>C polymorphism of the Nei endonuclease VIII-like 1 (NEIL1) nor the c.2285T>C polymorphism of the poly(ADP-ribose) polymerase-1 (PARP-1) was associated with KC. In conclusion, the variability of the XRCC1 and POLG genes may play a role in KC pathogenesis and determine the risk of this disease.

Indexed as

DNA RepairPolymorphism, GeneticAdolescentAdultAgedAged, 80 and overAllelesCase-Control StudiesDNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA GlycosylasesDNA Polymerase gammaEpistasis, GeneticFemaleGenotypeHaplotypesDNA-Binding ProteinsDNA-Directed DNA PolymeraseDNA GlycosylasesDNA Polymerase gammaNEIL1 protein, humanPARP1 protein, humanPOLG protein, humanPoly (ADP-Ribose) Polymerase-1Poly(ADP-ribose) PolymerasesX-ray Repair Cross Complementing Protein 1XRCC1 protein, human

Identifiers

PMID25356504
PMCPMC4264133
OpenAlexW2092584021

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.