Evidence map›Paper›PMID 25355807›Full record

ArticleGenome biology and evolution2014

Conserved and divergent patterns of DNA methylation in higher vertebrates.

Ning Jiang, Lin Wang, Jing Chen, Luwen Wang, Lindsey Leach, Zewei Luo

Open access · goldAbstract read
In one paragraph

Article in Genome biology and evolution, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.0field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 35 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Ning JiangDepartment of Biostatistics & Computational Biology, SKLG, School of Life Sciences, Fudan University, Shanghai, China School of Biosciences, The University of Birmingham, Birmingham B15 2TT United Kingdom.
Lin WangDepartment of Biostatistics & Computational Biology, SKLG, School of Life Sciences, Fudan University, Shanghai, China.
Jing ChenSchool of Biosciences, The University of Birmingham, Birmingham B15 2TT United Kingdom.
Luwen WangDepartment of Biostatistics & Computational Biology, SKLG, School of Life Sciences, Fudan University, Shanghai, China.
Lindsey LeachSchool of Biosciences, The University of Birmingham, Birmingham B15 2TT United Kingdom zwluo@fudan.edu.cn l.j.leach@bham.ac.uk.
Zewei LuoDepartment of Biostatistics & Computational Biology, SKLG, School of Life Sciences, Fudan University, Shanghai, China School of Biosciences, The University of Birmingham, Birmingham B15 2TT United Kingdom zwluo@fudan.edu.cn l.j.leach@bham.ac.uk.
Fudan University · CNUniversity of Birmingham · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA methylation in the genome plays a fundamental role in the regulation of gene expression and is widespread in the genome of eukaryotic species. For example, in higher vertebrates, there is a "global" methylation pattern involving complete methylation of CpG sites genome-wide, except in promoter regions that are typically enriched for CpG dinucleotides, or so called "CpG islands." Here, we comprehensively examined and compared the distribution of CpG sites within ten model eukaryotic species and linked the observed patterns to the role of DNA methylation in controlling gene transcription. The analysis revealed two distinct but conserved methylation patterns for gene promoters in human and mouse genomes, involving genes with distinct distributions of promoter CpGs and gene expression patterns. Comparative analysis with four other higher vertebrates revealed that the primary regulatory role of the DNA methylation system is highly conserved in higher vertebrates.

Indexed as

DNA MethylationEvolution, MolecularAnimalsCpG IslandsGenome, HumanHumansMicePromoter Regions, GeneticTranscription, Geneticcomparative phylogenetic analysisconservation and divergence in DNA methylationCpG sites within promoterseukaryotesgenome-wide CpG site distribution

Identifiers

PMID25355807
PMCPMC4255770
OpenAlexW1987111014

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.