Evidence map›Paper›PMID 25355795›Full record

ArticleClinical and vaccine immunology : CVI2015

Systems immunology reveals markers of susceptibility to West Nile virus infection.

Feng Qian, Gautam Goel, Hailong Meng, Xiaomei Wang, Fuping You, Lesley Devine, Khadir Raddassi, Melissa N Garcia, Kristy O Murray, Christopher R Bolen and 7 more

Open access · diamondAbstract read
In one paragraph

Article in Clinical and vaccine immunology : CVI, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
6.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 36 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 4 institutions in 2 countries.

Feng QianSection of Rheumatology, Yale School of Medicine, New Haven, Connecticut, USA.
Gautam GoelCenter for Computational and Integrative Biology, Massachusetts General Hospital, Boston, Massachusetts, USA.
Hailong MengInterdepartmental Program in Computational Biology and Bioinformatics, Yale School of Medicine, New Haven, Connecticut, USA.
Xiaomei WangSection of Rheumatology, Yale School of Medicine, New Haven, Connecticut, USA.
Fuping YouSection of Infectious Disease, Yale School of Medicine, New Haven, Connecticut, USA.
Lesley DevineDepartment of Laboratory Medicine, Yale School of Medicine, New Haven, Connecticut, USA.
Khadir RaddassiDepartment of Neurology, Yale School of Medicine, New Haven, Connecticut, USA.
Melissa N GarciaBaylor College of Medicine, Houston, Texas, USA.
Kristy O MurrayBaylor College of Medicine, Houston, Texas, USA.
Christopher R BolenInterdepartmental Program in Computational Biology and Bioinformatics, Yale School of Medicine, New Haven, Connecticut, USA.
Renaud GaujouxDepartment of Immunology, Rappaport Institute of Medical Research, Faculty of Medicine and Faculty of Biology, Technion, Haifa, Israel.
Shai S Shen-OrrDepartment of Immunology, Rappaport Institute of Medical Research, Faculty of Medicine and Faculty of Biology, Technion, Haifa, Israel.
David HaflerDepartment of Neurology, Yale School of Medicine, New Haven, Connecticut, USA.
Erol FikrigSection of Infectious Disease, Yale School of Medicine, New Haven, Connecticut, USA Howard Hughes Medical Institute, Yale School of Medicine, New Haven, Connecticut, USA.
Ramnik XavierCenter for Computational and Integrative Biology, Massachusetts General Hospital, Boston, Massachusetts, USA.
Steven H KleinsteinInterdepartmental Program in Computational Biology and Bioinformatics, Yale School of Medicine, New Haven, Connecticut, USA Department of Pathology, Yale School of Medicine, New Haven, Connecticut, USA.
Ruth R MontgomerySection of Rheumatology, Yale School of Medicine, New Haven, Connecticut, USA ruth.montgomery@yale.edu.
Yale University · USBaylor College of Medicine · USMassachusetts General Hospital · USRappaport Family Institute for Research in the Medical Sciences · IL

Funding

Using a tonsil organoid system to probe conditions for the induction of protective antibody and T cell responses to influenza.U19AI057229 · NIAID · STANFORD UNIVERSITY · PI Mark Morris Davis · 2003 to 2026
$88.5M
Systems investigation of vaccine responses in B cell depleted autoimmune patientsU19AI089992 · NIAID · YALE UNIVERSITY · PI David A. Hafler, RUTH R MONTGOMERY · 2010 to 2026
$50.4M
Yale University Clinical and Translational Science Award ProgramUL1TR000142 · NCATS · YALE UNIVERSITY · PI SHERWIN, ROBERT S · 2012 to 2015
$31.8M
Renal And Neurological Outcomes In Chronically Infected West Nile Virus PatientsR01AI091816 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MURRAY, KRISTY · 2011 to 2014
$1.5M
NCATS NIH HHS UL1 TR000142NIAID NIH HHS AI057229NIAID NIH HHS AI091816NIAID NIH HHS R01 AI091816NIAID NIH HHS U19 AI057229NIAID NIH HHS U19 AI089992NIAID NIH HHS U19AI089992
6 · The paper itself

Abstract

West Nile virus (WNV) infection is usually asymptomatic but can cause severe neurological disease and death, particularly in older patients, and how individual variations in immunity contribute to disease severity is not yet defined. Animal studies identified a role for several immunity-related genes that determine the severity of infection. We have integrated systems-level transcriptional and functional data sets from stratified cohorts of subjects with a history of WNV infection to define whether these markers can distinguish susceptibility in a human population. Transcriptional profiles combined with immunophenotyping of primary cells identified a predictive signature of susceptibility that was detectable years after acute infection (67% accuracy), with the most prominent alteration being decreased IL1B induction following ex vivo infection of macrophages with WNV. Deconvolution analysis also determined a significant role for CXCL10 expression in myeloid dendritic cells. This systems analysis identified markers of pathogenic mechanisms and offers insights into potential therapeutic strategies.

Indexed as

Disease SusceptibilityAdultAgedAged, 80 and overChemokine CXCL10FemaleGene Expression ProfilingGenetic MarkersHumansImmunophenotypingInterleukin-1betaMaleMiddle AgedSystems BiologyTranscription, GeneticWest Nile virusChemokine CXCL10CXCL10 protein, humanGenetic MarkersInterleukin-1beta

Identifiers

PMID25355795
PMCPMC4278927
OpenAlexW2148150479

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.