Evidence map›Paper›PMID 25354728›Full record

ArticleAmerican journal of physiology. Regulatory, integrative and comparative physiology2014

Caffeine exposure alters cardiac gene expression in embryonic cardiomyocytes.

Xiefan Fang, Wenbin Mei, William B Barbazuk, Scott A Rivkees, Christopher C Wendler

Open access · greenAbstract read
In one paragraph

Article in American journal of physiology. Regulatory, integrative and comparative physiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
4.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 28 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Article
  5. The Epigenetic Effects of Coffee.Molecules (Basel, Switzerland) · 2023
    Review
  6. Maternal caffeine intake and DNA methylation in newborn cord blood.The American journal of clinical nutrition · 2022
    Article
  7. Impacts of Caffeine during Pregnancy.Trends in endocrinology and metabolism: TEM · 2020
    Review
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Knockdown of DNA methyltransferase 3a alters gene expression and inhibits function of embryonic cardiomyocytes.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2016
    Article
  14. Article
  15. Review
  16. cAMP induces hypertrophy and alters DNA methylation in HL-1 cardiomyocytes.American journal of physiology. Cell physiology · 2015
    Article
  17. Transcriptomic Changes in Zebrafish Embryos and Larvae Following Benzo[a]pyrene Exposure.Toxicological sciences : an official journal of the Society of Toxicology · 2015
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Xiefan FangDepartment of Pediatrics, College of Medicine, University of Florida, Gainesville, Florida; and.
Wenbin MeiDepartment of Biology, University of Florida, Gainesville, Florida.
William B BarbazukDepartment of Biology, University of Florida, Gainesville, Florida.
Scott A RivkeesDepartment of Pediatrics, College of Medicine, University of Florida, Gainesville, Florida; and.
Christopher C WendlerDepartment of Pediatrics, College of Medicine, University of Florida, Gainesville, Florida; and cwendler@ufl.edu.
University of Florida · US

Funding

Adenosinergic Mechanisms of Intrauterine Growth RetardationR01HD058086 · NICHD · YALE UNIVERSITY · PI RIVKEES, SCOTT A. · 2009 to 2010
$824k
NICHD NIH HHS R01 HD058086
6 · The paper itself

Abstract

Previous studies demonstrated that in utero caffeine treatment at embryonic day (E) 8.5 alters DNA methylation patterns, gene expression, and cardiac function in adult mice. To provide insight into the mechanisms, we examined cardiac gene and microRNA (miRNA) expression in cardiomyocytes shortly after exposure to physiologically relevant doses of caffeine. In HL-1 and primary embryonic cardiomyocytes, caffeine treatment for 48 h significantly altered the expression of cardiac structural genes (Myh6, Myh7, Myh7b, Tnni3), hormonal genes (Anp and BnP), cardiac transcription factors (Gata4, Mef2c, Mef2d, Nfatc1), and microRNAs (miRNAs; miR208a, miR208b, miR499). In addition, expressions of these genes were significantly altered in embryonic hearts exposed to in utero caffeine. For in utero experiments, pregnant CD-1 dams were treated with 20-60 mg/kg of caffeine, which resulted in maternal circulation levels of 37.3-65.3 μM 2 h after treatment. RNA sequencing was performed on embryonic ventricles treated with vehicle or 20 mg/kg of caffeine daily from E6.5-9.5. Differential expression (DE) analysis revealed that 124 genes and 849 transcripts were significantly altered, and differential exon usage (DEU) analysis identified 597 exons that were changed in response to prenatal caffeine exposure. Among the DE genes identified by RNA sequencing were several cardiac structural genes and genes that control DNA methylation and histone modification. Pathway analysis revealed that pathways related to cardiovascular development and diseases were significantly affected by caffeine. In addition, global cardiac DNA methylation was reduced in caffeine-treated cardiomyocytes. Collectively, these data demonstrate that caffeine exposure alters gene expression and DNA methylation in embryonic cardiomyocytes.

Indexed as

AnimalsCaffeineCells, CulturedCell ShapeCell SurvivalDNA MethylationDose-Response Relationship, DrugFemaleGene Expression ProfilingGene Expression Regulation, DevelopmentalGestational AgeHeartMaternal ExposureMiceMicroRNAsMyocytes, CardiacCaffeineMicroRNAsRNA, MessengerTranscription Factorscaffeinecardiac developmentcardiomyocytedifferential exon usagedifferential gene expression

Identifiers

PMID25354728
PMCPMC4269671
OpenAlexW1991792018

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.