Evidence map›Paper›PMID 25352746›Full record

ArticleMolecular vision2014

Novel deletions involving the USH2A gene in patients with Usher syndrome and retinitis pigmentosa.

Gema García-García, Elena Aller, Teresa Jaijo, Maria J Aparisi, Lise Larrieu, Valérie Faugère, Fiona Blanco-Kelly, Carmen Ayuso, Anne-Francoise Roux, José M Millán

Open access · greenAbstract read
In one paragraph

Article in Molecular vision, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
0.7field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 15 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Observational
  5. Article
  6. Usher Syndrome: Genetics of a Human Ciliopathy.International journal of molecular sciences · 2021
    Review
  7. Noncoding mutation inMolecular vision · 2021
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Gema García-GarcíaGrupo de Investigación en Enfermedades Neurosensoriales, Instituto de Investigación Sanitaria La Fe (IIS-La Fe), Valencia, Spain ; Inserm, U827, Montpellier, F-34000, France.
Elena AllerGrupo de Investigación en Enfermedades Neurosensoriales, Instituto de Investigación Sanitaria La Fe (IIS-La Fe), Valencia, Spain ; CIBER de Enfermedades Raras (CIBERER), Madrid, Spain.
Teresa JaijoGrupo de Investigación en Enfermedades Neurosensoriales, Instituto de Investigación Sanitaria La Fe (IIS-La Fe), Valencia, Spain ; CIBER de Enfermedades Raras (CIBERER), Madrid, Spain.
Maria J AparisiGrupo de Investigación en Enfermedades Neurosensoriales, Instituto de Investigación Sanitaria La Fe (IIS-La Fe), Valencia, Spain ; CIBER de Enfermedades Raras (CIBERER), Madrid, Spain.
Lise LarrieuCHU Montpellier, Laboratoire de Génétique Moléculaire, Montpellier, F-34000, France.
Valérie FaugèreCHU Montpellier, Laboratoire de Génétique Moléculaire, Montpellier, F-34000, France.
Fiona Blanco-KellyServicio de Genetica, IIS - Fundación Jiménez Diaz, UAM, Madrid, Spain.
Carmen AyusoCIBER de Enfermedades Raras (CIBERER), Madrid, Spain ; Servicio de Genetica, IIS - Fundación Jiménez Diaz, UAM, Madrid, Spain.
Anne-Francoise RouxInserm, U827, Montpellier, F-34000, France ; CHU Montpellier, Laboratoire de Génétique Moléculaire, Montpellier, F-34000, France.
José M MillánGrupo de Investigación en Enfermedades Neurosensoriales, Instituto de Investigación Sanitaria La Fe (IIS-La Fe), Valencia, Spain ; CIBER de Enfermedades Raras (CIBERER), Madrid, Spain ; Unidad de Genética y Diagnóstico Prenatal, Hospital Universitario y Politécnico La Fe, Valencia, Spain.
Institut de Génétique Moléculaire de Montpellier · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purposeThe aim of the present work was to identify and characterize large rearrangements involving the USH2A gene in patients with Usher syndrome and nonsyndromic retinitis pigmentosa.

methodsThe multiplex ligation-dependent probe amplification (MLPA) technique combined with a customized array-based comparative genomic hybridization (aCGH) analysis was applied to 40 unrelated patients previously screened for point mutations in the USH2A gene in which none or only one pathologic mutation was identified.

resultsWe detected six large deletions involving USH2A in six out of the 40 cases studied. Three of the patients were homozygous for the deletion, and the remaining three were compound heterozygous with a previously identified USH2A point mutation. In five of these cases, the patients displayed Usher type 2, and the remaining case displayed nonsyndromic retinitis pigmentosa. The exact breakpoint junctions of the deletions found in USH2A in four of these cases were characterized.

conclusionsOur study highlights the need to develop improved efficient strategies of mutation screening based upon next generation sequencing (NGS) that reduce cost, time, and complexity and allow simultaneous identification of all types of disease-causing mutations in diagnostic procedures.

Indexed as

Base SequenceSequence DeletionAdultComparative Genomic HybridizationDNA Mutational AnalysisExonsExtracellular Matrix ProteinsFemaleHeterozygoteHomozygoteHumansIntronsMaleMiddle AgedMolecular Sequence DataPedigreeExtracellular Matrix ProteinsUSH2A protein, human

Identifiers

PMID25352746
PMCPMC4173666
OpenAlexW1856871506

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.