Evidence map›Paper›PMID 25352737›Full record

ArticleMolecular vision2014

Electronic medical records and genomics (eMERGE) network exploration in cataract: several new potential susceptibility loci.

Marylyn D Ritchie, Shefali S Verma, Molly A Hall, Robert J Goodloe, Richard L Berg, Dave S Carrell, Christopher S Carlson, Lin Chen, David R Crosslin, Joshua C Denny and 13 more

Open access · greenAbstract read
In one paragraph

Article in Molecular vision, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 27 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
27citing papers in PubMed, 1 pooled it
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

27 citing papers in PubMed, 1 synthesis or guideline pooled it, 41 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. The Physiological and Pathological Role of Acyl-CoA Oxidation.International journal of molecular sciences · 2023
    Review
  5. Review
  6. Returning integrated genomic risk and clinical recommendations: The eMERGE study.Genetics in medicine : official journal of the American College of Medical Genetics · 2023
    Article
  7. The Role of Electronic Health Records in Advancing Genomic Medicine.Annual review of genomics and human genetics · 2021
    Review
  8. Article
  9. Review
  10. Article
  11. The Genomics Research and Innovation Network: creating an interoperable, federated, genomics learning system.Genetics in medicine : official journal of the American College of Medical Genetics · 2020
    Article
  12. Article
  13. Article
  14. Article
  15. Comorbidity Characterization Among eMERGE Institutions: A Pilot Evaluation with the Johns Hopkins Adjusted Clinical Groups® System.AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science · 2019
    Article
  16. Concepts Driving Pharmacogenomics Implementation Into Everyday Healthcare.Pharmacogenomics and personalized medicine · 2019
    Review
  17. Article
  18. Exome Array Analysis of Nuclear Lens Opacity.Ophthalmic epidemiology · 2018
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors at 10 institutions in 1 country.

Marylyn D RitchieDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA.
Shefali S VermaDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA.
Molly A HallDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, PA.
Robert J GoodloeCenter for Human Genetics Research, Vanderbilt University, Nashville, TN.
Richard L BergBiomedical Informatics Research Center, Biostatistics, Marshfield Clinic Research Foundation, Marshfield, WI.
Dave S CarrellGroup Health Research Institute, Seattle, WA.
Christopher S CarlsonFred Hutchinson Cancer Research Center, Seattle, WA.
Lin ChenOphthalmology, Marshfield Clinic Research Foundation, Marshfield, WI.
David R CrosslinDivision of Medical Genetics, University of Washington, Seattle, WA ; Department of Biostatistics, University of Washington, Seattle, WA.
Joshua C DennyDepartments of Biomedical Informatics, Vanderbilt University, Nashville, TN ; Department of Medicine, Vanderbilt University, Nashville, TN.
Gail JarvikDivision of Medical Genetics, University of Washington, Seattle, WA ; Departments of Medicine and Genome Sciences, University of Washington, Seattle, WA.
Rongling LiOffice of Population Genomics, National Human Genome Research Institute, Bethesda, MD.
James G LinnemanBiomedical Informatics Research Center, Marshfield Clinic Research Foundation, Marshfield, WI.
Jyoti PathakDepartment of Biomedical Informatics, Mayo Clinic College of Medicine, Rochester, MN.
Peggy PeissigBiomedical Informatics Research Center, Marshfield Clinic Research Foundation, Marshfield, WI.
Luke V RasmussenDivision of Health and Biomedical Informatics, Department of Preventive Medicine, Northwestern University, Chicago, IL.
Andrea H RamirezDepartment of Medicine, Vanderbilt University, Nashville, TN.
Xiaoming WangDepartments of Biomedical Informatics, Vanderbilt University, Nashville, TN.
Russell A WilkeDepartments of Biomedical Informatics, Vanderbilt University, Nashville, TN ; IMAGENETICS at Sanford Medical Center, Fargo, ND and Department of Internal Medicine, University of North Dakota, Fargo, ND.
Wendy A WolfDivision of Genetics and Genomics, Boston Children's Hospital and Department of Pediatrics, Harvard Medical School, Boston, MA.
Eric S TorstensonCenter for Human Genetics Research, Vanderbilt University, Nashville, TN.
Stephen D TurnerPublic Health Sciences, University of Virginia, Charlottesville, VA.
Catherine A McCartyEssentia Institute of Rural Health, Duluth, MN.
Pennsylvania State University · USCenter for Human Genetics · USMarshfield Clinic · USEssentia Health · USFred Hutch Cancer Center · USKaiser Permanente Washington Health Research Institute · USNational Human Genome Research Institute · USNorthwestern University · USUniversity of Virginia · USVanderbilt University · US

Funding

Institutional Clinical and Translational Science AwardUL1TR000427 · NCATS · UNIVERSITY OF WISCONSIN-MADISON · PI DREZNER, MARC KENNETH · 2012 to 2016
$32.2M
Multidisciplinary Clinical and Translational Science (MCTS) Program (UL1)UL1TR000150 · NCATS · NORTHWESTERN UNIVERSITY AT CHICAGO · PI LLOYD-JONES, DONALD M · 2012 to 2013
$10.1M
Vanderbilt Genome-Electronic Records ProjectU01HG004603 · NHGRI · VANDERBILT UNIVERSITY · PI RODEN, DAN M · 2007 to 2011
$7.3M
National Infrastructure for Standardized and Portable EHR Phenotyping AlgorithmsR01GM105688 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI LUO, YUAN, PATHAK, JYOTISHMAN · 2013 to 2020
$5.7M
Development and Use of Network Infrastructure for High-Throughput GWA StudiesU01HG004610 · NHGRI · KAISER FOUNDATION HEALTH PLAN OF WASHINGTON · PI LARSON, ERIC B · 2007 to 2010
$4.2M
IRIS: Incorporating Research Into SightU01HG006389 · NHGRI · ESSENTIA INSTITUTE OF RURAL HEALTH · PI MCCARTY, CATHERINE ANNE · 2011 to 2014
$4.1M
EMR Phenotypes and Community Engaged Genomic AssociationsU01HG004599 · NHGRI · MAYO CLINIC ROCHESTER · PI CHUTE, CHRISTOPHER G · 2007 to 2010
$3.7M
Genome-wide Studies from the NUgene BiorespositoryU01HG004609 · NHGRI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI CHISHOLM, REX L · 2007 to 2010
$3.7M
Genome-Wide Study of Cataract and Low HDL in the Personalized Medicine Research PU01HG004608 · NHGRI · MARSHFIELD CLINIC RESEARCH FOUNDATION · PI MCCARTY, CATHERINE ANNE · 2007 to 2010
$3.3M
Training Program on Genetic Variation and Human PhenotypesT32GM080178 · NIGMS · VANDERBILT UNIVERSITY · PI COX, NANCY J, SAMUELS, DAVID C · 2007 to 2021
$3.1M
NCATS NIH HHS UL1 TR000150NCATS NIH HHS UL1 TR000427NHGRI NIH HHS U01 HG004599NHGRI NIH HHS U01 HG004603NHGRI NIH HHS U01 HG004608NHGRI NIH HHS U01HG004608NHGRI NIH HHS U01 HG004609NHGRI NIH HHS U01HG004609NHGRI NIH HHS U01 HG004610NHGRI NIH HHS U01HG004610NHGRI NIH HHS U01 HG006389NHGRI NIH HHS U01HG006389NHGRI NIH HHS U01HG04599NHGRI NIH HHS U01HG04603NIGMS NIH HHS R01 GM105688NIGMS NIH HHS T32 GM080178
6 · The paper itself

Abstract

purposeCataract is the leading cause of blindness in the world, and in the United States accounts for approximately 60% of Medicare costs related to vision. The purpose of this study was to identify genetic markers for age-related cataract through a genome-wide association study (GWAS).

methodsIn the electronic medical records and genomics (eMERGE) network, we ran an electronic phenotyping algorithm on individuals in each of five sites with electronic medical records linked to DNA biobanks. We performed a GWAS using 530,101 SNPs from the Illumina 660W-Quad in a total of 7,397 individuals (5,503 cases and 1,894 controls). We also performed an age-at-diagnosis case-only analysis.

resultsWe identified several statistically significant associations with age-related cataract (45 SNPs) as well as age at diagnosis (44 SNPs). The 45 SNPs associated with cataract at p<1×10(-5) are in several interesting genes, including ALDOB, MAP3K1, and MEF2C. All have potential biologic relationships with cataracts.

conclusionsThis is the first genome-wide association study of age-related cataract, and several regions of interest have been identified. The eMERGE network has pioneered the exploration of genomic associations in biobanks linked to electronic health records, and this study is another example of the utility of such resources. Explorations of age-related cataract including validation and replication of the association results identified herein are needed in future studies.

Indexed as

Genetic Predisposition to DiseasePolymorphism, Single NucleotideAgedAged, 80 and overAge FactorsAlgorithmsCataractDatabases, Nucleic AcidElectronic Health RecordsFemaleFructose-Bisphosphate AldolaseGenetic MarkersGenome, HumanGenome-Wide Association StudyHealth Care CostsHumansFructose-Bisphosphate AldolaseGenetic MarkersMAP3K1 protein, humanMAP Kinase Kinase Kinase 1MEF2C protein, humanMEF2 Transcription Factors

Identifiers

PMID25352737
PMCPMC4168835
OpenAlexW2101461562

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.