Evidence map›Paper›PMID 25352558›Full record

ArticleNucleic acids research2014

Systematic mutational analysis of the LytTR DNA binding domain of Staphylococcus aureus virulence gene transcription factor AgrA.

Sophie S Nicod, Robert O J Weinzierl, Lynn Burchell, Andres Escalera-Maurer, Ellen H James, Sivaramesh Wigneshweraraj

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
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  8. A Novel Aza-Derivative InhibitsFrontiers in microbiology · 2021
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  12. Conformational features of theBiochemistry and biophysics reports · 2016
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Sophie S NicodMRC Centre for Molecular Microbiology and Infection, Imperial College London, London, UK.
Robert O J WeinzierlDepartment of Life Sciences, Imperial College London, London, UK.
Lynn BurchellMRC Centre for Molecular Microbiology and Infection, Imperial College London, London, UK.
Andres Escalera-MaurerDepartment of Life Sciences, Imperial College London, London, UK.
Ellen H JamesMRC Centre for Molecular Microbiology and Infection, Imperial College London, London, UK.
Sivaramesh WigneshwerarajMRC Centre for Molecular Microbiology and Infection, Imperial College London, London, UK s.r.wig@imperial.ac.uk.
Imperial College London · GB

Funding

Biotechnology and Biological Sciences Research Council BB/I001492/1Medical Research Council G1100057Medical Research Council MR/J006874/1Wellcome Trust 100958
6 · The paper itself

Abstract

Most DNA-binding bacterial transcription factors contact DNA through a recognition α-helix in their DNA-binding domains. An emerging class of DNA-binding transcription factors, predominantly found in pathogenic bacteria interact with the DNA via a relatively novel type of DNA-binding domain, called the LytTR domain, which mainly comprises β strands. Even though the crystal structure of the LytTR domain of the virulence gene transcription factor AgrA from Staphylococcus aureus bound to its cognate DNA sequence is available, the contribution of specific amino acid residues in the LytTR domain of AgrA to transcription activation remains elusive. Here, for the first time, we have systematically investigated the role of amino acid residues in transcription activation in a LytTR domain-containing transcription factor. Our analysis, which involves in vivo and in vitro analyses and molecular dynamics simulations of S. aureus AgrA identifies a highly conserved tyrosine residue, Y229, as a major amino acid determinant for maximal activation of transcription by AgrA and provides novel insights into structure-function relationships in S. aureus AgrA.

Indexed as

Transcriptional ActivationBacterial ProteinsMutagenesisMutationProtein BindingProtein Structure, TertiaryStaphylococcus aureusStructure-Activity RelationshipTrans-ActivatorsVirulence FactorsBacterial ProteinsTrans-ActivatorsVirulence Factors

Identifiers

PMID25352558
PMCPMC4227749
OpenAlexW2116113223

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.