Evidence map›Paper›PMID 25352543›Full record

ArticleNucleic acids research2015

RNAcentral: an international database of ncRNA sequences.

RNAcentral Consortium, Anton I Petrov, Simon J E Kay, Richard Gibson, Eugene Kulesha, Dan Staines, Elspeth A Bruford, Mathew W Wright, Sarah Burge, Robert D Finn and 30 more

Abstract read
In one paragraph

Article in Nucleic acids research, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 65 papers.

0numbers the graph read from it
0cells of the map it votes in
65citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

65 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Chemical Annealing Restructures RNA for Nanopore Detection.Journal of the American Chemical Society · 2024
    Article
  7. Article
  8. Metagenome-assembled genomes of threeAccess microbiology · 2024
    Article
  9. Article
  10. Article
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Review
  17. 3D Modeling of Non-coding RNA Interactions.Advances in experimental medicine and biology · 2022
    Article
  18. Article
  19. Review
  20. Article

5 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors.

RNAcentral Consortium
Anton I Petrov
Simon J E Kay
Richard Gibson
Eugene Kulesha
Dan Staines
Elspeth A Bruford
Mathew W Wright
Sarah Burge
Robert D Finn
Paul J Kersey
Guy Cochrane
Alex Bateman
Sam Griffiths-Jones
Jennifer Harrow
Patricia P Chan
Todd M Lowe
Christian W Zwieb
Jacek Wower
Kelly P Williams
Corey M Hudson
Robin Gutell
Michael B Clark
Marcel Dinger
Xiu Cheng Quek
Janusz M Bujnicki
Nam-Hai Chua
Jun Liu
Huan Wang
Geir Skogerbø
Yi Zhao
Runsheng Chen
Weimin Zhu
James R Cole
Benli Chai
Hsien-Da Huang
His-Yuan Huang
J Michael Cherry
Artemis Hatzigeorgiou
Kim D Pruitt

Funding

Nomenclature of Human and Vertebrate GenesU41HG003345 · NHGRI · EUROPEAN MOLECULAR BIOLOGY LABORATORY · PI BIRNEY, EWAN, BRUFORD, ELSPETH · 2013 to 2017
$2.4M
Biotechnology and Biological Sciences Research Council BB/J019232/1Biotechnology and Biological Sciences Research Council BB/J019321/1Intramural NIH HHSNHGRI NIH HHS U41 HG003345Wellcome Trust
6 · The paper itself

Abstract

The field of non-coding RNA biology has been hampered by the lack of availability of a comprehensive, up-to-date collection of accessioned RNA sequences. Here we present the first release of RNAcentral, a database that collates and integrates information from an international consortium of established RNA sequence databases. The initial release contains over 8.1 million sequences, including representatives of all major functional classes. A web portal (http://rnacentral.org) provides free access to data, search functionality, cross-references, source code and an integrated genome browser for selected species.

Indexed as

Databases, Nucleic AcidChromosome MappingHumansInternetRNA, UntranslatedSequence Analysis, RNARNA, Untranslated

Identifiers

PMID25352543
PMCPMC4384043

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.