Evidence map›Paper›PMID 25352331›Full record

ArticleProtein science : a publication of the Protein Society2015

Refolding of a fully functional flavivirus methyltransferase revealed that S-adenosyl methionine but not S-adenosyl homocysteine is copurified with flavivirus methyltransferase.

Matthew B Brecher, Zhong Li, Jing Zhang, Hui Chen, Qishan Lin, Binbin Liu, Hongmin Li

Open access · bronzeAbstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Current Trends and Limitations in Dengue Antiviral Research.Tropical medicine and infectious disease · 2021
    Review
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Matthew B BrecherWadsworth Center, New York State Department of Health, Albany, New York, 12208.
Zhong Li
Jing Zhang
Hui Chen
Qishan Lin
Binbin Liu
Hongmin Li
Wadsworth Center · USAlbany State University · USNew York State Department of Health · USUniversity at Albany, State University of New York · US

Funding

Inhibition and mechanism of flavivirus methyltransferaseR01AI094335 · NIAID · WADSWORTH CENTER · PI GHOSH, ARUN K, KRAMER, LAURA D · 2011 to 2015
$3.2M
NIAID NIH HHS AI094335NIAID NIH HHS R01 AI094335
6 · The paper itself

Abstract

Methylation of flavivirus RNA is vital for its stability and translation in the infected host cell. This methylation is mediated by the flavivirus methyltransferase (MTase), which methylates the N7 and 2'-O positions of the viral RNA cap by using S-adenosyl-l-methionine (SAM) as a methyl donor. In this report, we demonstrate that SAM, in contrast to the reaction by-product S-adenosyl-l-homocysteine, which was assumed previously, is copurified with the Dengue (DNV) and West Nile virus MTases produced in Escherichia coli (E. coli). This endogenous SAM can be removed by denaturation and refolding of the MTase protein. The refolded MTase of DNV serotype 3 (DNV3) displays methylation activity comparable to native enzyme, and its crystal structure at 2.1 Å is almost identical to that of native MTase. We characterized the binding of Sinefungin (SIN), a previously described SAM-analog inhibitor of MTase function, to the native and refolded DNV3 MTase by isothermal titration calorimetry, and found that SIN binds to refolded MTase with more than 16 times the affinity of SIN binding to the MTase purified natively. Moreover, we show that SAM is also copurified with other flavivirus MTases, indicating that purification by refolding may be a generally applicable tool for studying flavivirus MTase inhibition.

Indexed as

Crystallography, X-RayDengueDengue VirusHumansMethyltransferasesModels, MolecularProtein RefoldingS-AdenosylhomocysteineS-AdenosylmethionineWest Nile FeverWest Nile virusMethyltransferasesS-AdenosylhomocysteineS-AdenosylmethionineflavivirusmethyltransferaserefoldingS-adenosyl methionine

Identifiers

PMID25352331
PMCPMC4282417
OpenAlexW1602665496

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.