Evidence map›Paper›PMID 25352272›Full record

ArticlePlant physiology2014

Promoter-based integration in plant defense regulation.

Baohua Li, Allison Gaudinier, Michelle Tang, Mallorie Taylor-Teeples, Ngoc T Nham, Cyrus Ghaffari, Darik Scott Benson, Margaret Steinmann, Jennifer A Gray, Siobhan M Brady and 1 more

Abstract read
In one paragraph

Article in Plant physiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 45 papers.

0numbers the graph read from it
0cells of the map it votes in
45citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

45 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
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  5. International journal of molecular sciences · 2025
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  7. Transcriptional activation ofFrontiers in plant science · 2025
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  8. Article
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  10. Review
  11. Review
  12. Article
  13. Identification andFrontiers in plant science · 2023
    Article
  14. Article
  15. Photoprotection during iron deficiency is mediated by the bHLH transcription factors PYE and ILR3.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  16. Article
  17. Microarray analysis ofPhysiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Baohua LiDepartments of Plant Sciences (B.L., M.T., N.T.N. C.G., D.S.B., M.S., J.A.G., D.J.K.) and Plant Biology (A.G., M.T., M.T.-T., J.A.G., S.M.B.) and Genome Center (A.G., M.T., M.T.-T., J.A.G., S.M.B.), University of California, Davis, California 95616; andDynaMo Center of Excellence, University of Copenhagen, DK-1871 Frederiksberg C, Denmark (D.J.K.).
Allison GaudinierDepartments of Plant Sciences (B.L., M.T., N.T.N. C.G., D.S.B., M.S., J.A.G., D.J.K.) and Plant Biology (A.G., M.T., M.T.-T., J.A.G., S.M.B.) and Genome Center (A.G., M.T., M.T.-T., J.A.G., S.M.B.), University of California, Davis, California 95616; andDynaMo Center of Excellence, University of Copenhagen, DK-1871 Frederiksberg C, Denmark (D.J.K.).
Michelle TangDepartments of Plant Sciences (B.L., M.T., N.T.N. C.G., D.S.B., M.S., J.A.G., D.J.K.) and Plant Biology (A.G., M.T., M.T.-T., J.A.G., S.M.B.) and Genome Center (A.G., M.T., M.T.-T., J.A.G., S.M.B.), University of California, Davis, California 95616; andDynaMo Center of Excellence, University of Copenhagen, DK-1871 Frederiksberg C, Denmark (D.J.K.).
Mallorie Taylor-TeeplesDepartments of Plant Sciences (B.L., M.T., N.T.N. C.G., D.S.B., M.S., J.A.G., D.J.K.) and Plant Biology (A.G., M.T., M.T.-T., J.A.G., S.M.B.) and Genome Center (A.G., M.T., M.T.-T., J.A.G., S.M.B.), University of California, Davis, California 95616; andDynaMo Center of Excellence, University of Copenhagen, DK-1871 Frederiksberg C, Denmark (D.J.K.).
Ngoc T NhamDepartments of Plant Sciences (B.L., M.T., N.T.N. C.G., D.S.B., M.S., J.A.G., D.J.K.) and Plant Biology (A.G., M.T., M.T.-T., J.A.G., S.M.B.) and Genome Center (A.G., M.T., M.T.-T., J.A.G., S.M.B.), University of California, Davis, California 95616; andDynaMo Center of Excellence, University of Copenhagen, DK-1871 Frederiksberg C, Denmark (D.J.K.).
Cyrus GhaffariDepartments of Plant Sciences (B.L., M.T., N.T.N. C.G., D.S.B., M.S., J.A.G., D.J.K.) and Plant Biology (A.G., M.T., M.T.-T., J.A.G., S.M.B.) and Genome Center (A.G., M.T., M.T.-T., J.A.G., S.M.B.), University of California, Davis, California 95616; andDynaMo Center of Excellence, University of Copenhagen, DK-1871 Frederiksberg C, Denmark (D.J.K.).
Darik Scott BensonDepartments of Plant Sciences (B.L., M.T., N.T.N. C.G., D.S.B., M.S., J.A.G., D.J.K.) and Plant Biology (A.G., M.T., M.T.-T., J.A.G., S.M.B.) and Genome Center (A.G., M.T., M.T.-T., J.A.G., S.M.B.), University of California, Davis, California 95616; andDynaMo Center of Excellence, University of Copenhagen, DK-1871 Frederiksberg C, Denmark (D.J.K.).
Margaret SteinmannDepartments of Plant Sciences (B.L., M.T., N.T.N. C.G., D.S.B., M.S., J.A.G., D.J.K.) and Plant Biology (A.G., M.T., M.T.-T., J.A.G., S.M.B.) and Genome Center (A.G., M.T., M.T.-T., J.A.G., S.M.B.), University of California, Davis, California 95616; andDynaMo Center of Excellence, University of Copenhagen, DK-1871 Frederiksberg C, Denmark (D.J.K.).
Jennifer A GrayDepartments of Plant Sciences (B.L., M.T., N.T.N. C.G., D.S.B., M.S., J.A.G., D.J.K.) and Plant Biology (A.G., M.T., M.T.-T., J.A.G., S.M.B.) and Genome Center (A.G., M.T., M.T.-T., J.A.G., S.M.B.), University of California, Davis, California 95616; andDynaMo Center of Excellence, University of Copenhagen, DK-1871 Frederiksberg C, Denmark (D.J.K.).
Siobhan M BradyDepartments of Plant Sciences (B.L., M.T., N.T.N. C.G., D.S.B., M.S., J.A.G., D.J.K.) and Plant Biology (A.G., M.T., M.T.-T., J.A.G., S.M.B.) and Genome Center (A.G., M.T., M.T.-T., J.A.G., S.M.B.), University of California, Davis, California 95616; andDynaMo Center of Excellence, University of Copenhagen, DK-1871 Frederiksberg C, Denmark (D.J.K.).
Daniel J KliebensteinDepartments of Plant Sciences (B.L., M.T., N.T.N. C.G., D.S.B., M.S., J.A.G., D.J.K.) and Plant Biology (A.G., M.T., M.T.-T., J.A.G., S.M.B.) and Genome Center (A.G., M.T., M.T.-T., J.A.G., S.M.B.), University of California, Davis, California 95616; andDynaMo Center of Excellence, University of Copenhagen, DK-1871 Frederiksberg C, Denmark (D.J.K.) kliebenstein@ucdavis.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A key unanswered question in plant biology is how a plant regulates metabolism to maximize performance across an array of biotic and abiotic environmental stresses. In this study, we addressed the potential breadth of transcriptional regulation that can alter accumulation of the defensive glucosinolate metabolites in Arabidopsis (Arabidopsis thaliana). A systematic yeast one-hybrid study was used to identify hundreds of unique potential regulatory interactions with a nearly complete complement of 21 promoters for the aliphatic glucosinolate pathway. Conducting high-throughput phenotypic validation, we showed that >75% of tested transcription factor (TF) mutants significantly altered the accumulation of the defensive glucosinolates. These glucosinolate phenotypes were conditional upon the environment and tissue type, suggesting that these TFs may allow the plant to tune its defenses to the local environment. Furthermore, the pattern of TF/promoter interactions could partially explain mutant phenotypes. This work shows that defense chemistry within Arabidopsis has a highly intricate transcriptional regulatory system that may allow for the optimization of defense metabolite accumulation across a broad array of environments.

Indexed as

Gene Expression Regulation, PlantArabidopsisArabidopsis ProteinsCluster AnalysisEnvironmentGene Regulatory NetworksGlucosinolatesMutagenesis, InsertionalPhenotypePlants, Genetically ModifiedPromoter Regions, GeneticSaccharomyces cerevisiaeStress, PhysiologicalTranscription FactorsArabidopsis ProteinsGlucosinolatesTranscription Factors

Identifiers

PMID25352272
PMCPMC4256871

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.