Evidence map›Paper›PMID 25351778›Full record

ArticleEuropean journal of human genetics : EJHG2015

Incomplete penetrance and phenotypic variability of 6q16 deletions including SIM1.

Laïla El Khattabi, Fabien Guimiot, Eva Pipiras, Joris Andrieux, Clarisse Baumann, Sonia Bouquillon, Anne-Lise Delezoide, Bruno Delobel, Florence Demurger, Hélène Dessuant and 27 more

Open access · bronzeAbstract read
In one paragraph

Article in European journal of human genetics : EJHG, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 67 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

37 authors at 15 institutions in 3 countries.

Laïla El Khattabi1] AP-HP, Groupe hospitalier Cochin-Broca-Hôtel Dieu, Laboratoire de Cytogénétique, Paris, France [2] INSERM, U1016 Institut Cochin, CNRS UMR8104, Université Paris Descartes, Sorbonne Paris Cité, Paris, France.
Fabien Guimiot1] AP-HP, Département de Génétique et Service de Biologie du développement, Hôpital Robert Debré, Université Paris Diderot, Sorbonne Paris Cité, DHU PROTECT, Paris, France [2] INSERM, U1141, Paris, France.
Eva Pipiras1] INSERM, U1141, Paris, France [2] AP-HP, Hôpital Jean Verdier, Laboratoire d'Histologie-Embryologie-Cytogénétique-BDR-CECOS, Bondy, France [3] Université Paris 13, Sorbonne Paris Cité, UFR SMBH, Bobigny, France.
Joris AndrieuxInstitut de Génétique Médicale, Hôpital Jeanne de Flandre, CHRU de Lille, Lille, France.
Clarisse BaumannAP-HP, Département de Génétique et Service de Biologie du développement, Hôpital Robert Debré, Université Paris Diderot, Sorbonne Paris Cité, DHU PROTECT, Paris, France.
Sonia BouquillonInstitut de Génétique Médicale, Hôpital Jeanne de Flandre, CHRU de Lille, Lille, France.
Anne-Lise Delezoide1] AP-HP, Département de Génétique et Service de Biologie du développement, Hôpital Robert Debré, Université Paris Diderot, Sorbonne Paris Cité, DHU PROTECT, Paris, France [2] INSERM, U1141, Paris, France.
Bruno DelobelCentre de Génétique Chromosomique, Saint-Vincent de Paul, GHIC, Lille, France.
Florence DemurgerService de Génétique Clinique CLAD-Ouest-CHU Rennes, université Rennes1, Rennes, France.
Hélène DessuantDépartement de Cytogénétique, Laboratoire Biomnis, Paris, France.
Séverine DrunatAP-HP, Département de Génétique et Service de Biologie du développement, Hôpital Robert Debré, Université Paris Diderot, Sorbonne Paris Cité, DHU PROTECT, Paris, France.
Christelle DubourgLaboratoire de Génétique Moléculaire, CHU Pontchaillou, UMR 6290 CNRS, IGDR, Faculté de Médecine, Université de Rennes 1, Rennes, France.
Céline DupontAP-HP, Département de Génétique et Service de Biologie du développement, Hôpital Robert Debré, Université Paris Diderot, Sorbonne Paris Cité, DHU PROTECT, Paris, France.
Laurence FaivreCentre de référence Anomalies du développement et Syndromes Malformatifs de l'Interrégion Est, Hôpital d'Enfants, CHU de Dijon et Université de Bourgogne, Dijon, France.
Muriel Holder-Espinasse1] Clinical Genetics Department, Guy's Hospital, Great Maze Pond, London, UK [2] Service de Génétique Clinique, Hôpital Jeanne de Flandres, CHRU de Lille, Lille, France.
Sylvie JaillardLaboratoire de Cytogénétique et Biologie Cellulaire, CHU Pontchaillou, Rennes, France.
Hubert JournelService de Génétique Médicale, Centre Hospitalier Bretagne Atlantique, Vannes, France.
Stanislas LyonnetDépartement de Génétique, Université Paris Descartes-Sorbonne Paris Cité, Imagine Institute, Hôpital Necker-Enfants Malades, INSERM U-1163, Paris, France.
Valérie MalanDépartement de Génétique, Université Paris Descartes-Sorbonne Paris Cité, Imagine Institute, Hôpital Necker-Enfants Malades, INSERM U-1163, Paris, France.
Alice MasurelCentre de référence Anomalies du développement et Syndromes Malformatifs de l'Interrégion Est, Hôpital d'Enfants, CHU de Dijon et Université de Bourgogne, Dijon, France.
Nathalie MarleCentre de référence Anomalies du développement et Syndromes Malformatifs de l'Interrégion Est, Hôpital d'Enfants, CHU de Dijon et Université de Bourgogne, Dijon, France.
Chantal MissirianLaboratoire de Génétique Chromosomique, CHU Timone enfants, AP-HM, Marseille, France.
Alexandre MoermanService de Génétique Clinique, Hôpital Jeanne de Flandres, CHRU de Lille, Lille, France.
Anne MonclaLaboratoire de Génétique Chromosomique, CHU Timone enfants, AP-HM, Marseille, France.
Sylvie OdentService de Génétique Clinique CLAD-Ouest-CHU Rennes, université Rennes1, Rennes, France.
Orazio PalumboMedical Genetics Unit, IRCCS Casa Sollievo della Sofferenza, San Giovanni Rotondo, Italy.ORCID 0000000165833482
Pietro PalumboMedical Genetics Unit, IRCCS Casa Sollievo della Sofferenza, San Giovanni Rotondo, Italy.
Aimé RavelInstitut Jérôme Lejeune, Paris, France.
Serge RomanaDépartement de Génétique, Université Paris Descartes-Sorbonne Paris Cité, Imagine Institute, Hôpital Necker-Enfants Malades, INSERM U-1163, Paris, France.
Anne-Claude TabetAP-HP, Département de Génétique et Service de Biologie du développement, Hôpital Robert Debré, Université Paris Diderot, Sorbonne Paris Cité, DHU PROTECT, Paris, France.
Mylène ValdugaLaboratoire de Génétique, EA 4002, CHU, Nancy-University, Nancy, France.
Marie VermelleService de Pédiatrie, Centre Hospitalier de Dunkerque, Dunkerque, France.
Massimo CarellaMedical Genetics Unit, IRCCS Casa Sollievo della Sofferenza, San Giovanni Rotondo, Italy.
Jean-Michel Dupont1] AP-HP, Groupe hospitalier Cochin-Broca-Hôtel Dieu, Laboratoire de Cytogénétique, Paris, France [2] INSERM, U1016 Institut Cochin, CNRS UMR8104, Université Paris Descartes, Sorbonne Paris Cité, Paris, France.
Alain Verloes1] AP-HP, Département de Génétique et Service de Biologie du développement, Hôpital Robert Debré, Université Paris Diderot, Sorbonne Paris Cité, DHU PROTECT, Paris, France [2] INSERM, U1141, Paris, France.ORCID 0000000348190264
Brigitte Benzacken1] AP-HP, Département de Génétique et Service de Biologie du développement, Hôpital Robert Debré, Université Paris Diderot, Sorbonne Paris Cité, DHU PROTECT, Paris, France [2] INSERM, U1141, Paris, France [3] AP-HP, Hôpital Jean Verdier, Laboratoire d'Histologie-Embryologie-Cytogénétique-BDR-CECOS, Bondy, France [4] Université Paris 13, Sorbonne Paris Cité, UFR SMBH, Bobigny, France.
Andrée Delahaye1] INSERM, U1141, Paris, France [2] AP-HP, Hôpital Jean Verdier, Laboratoire d'Histologie-Embryologie-Cytogénétique-BDR-CECOS, Bondy, France [3] Université Paris 13, Sorbonne Paris Cité, UFR SMBH, Bobigny, France.
Inserm · FRDélégation Paris 7 · FRCasa Sollievo della Sofferenza · ITCentre Hospitalier Universitaire de Lille · FRHôpital Necker-Enfants Malades · FRUniversité de Bourgogne · FRCentre Hospitalier Universitaire de Rennes · FRDélégation Paris 5 · FRCentre hospitalier Bretagne Atlantique · FRCentre Hospitalier de Vitré · FRCentre National de la Recherche Scientifique · FRFondation Jérôme-Lejeune · FRGroupe Hospitalier de l'Institut Catholique de Lille · FRGuy's Hospital · GBLaboratoire de Génétique Cellulaire · FR

Funding

Wellcome Trust
6 · The paper itself

Abstract

6q16 deletions have been described in patients with a Prader-Willi-like (PWS-like) phenotype. Recent studies have shown that certain rare single-minded 1 (SIM1) loss-of-function variants were associated with a high intra-familial risk for obesity with or without features of PWS-like syndrome. Although SIM1 seems to have a key role in the phenotype of patients carrying 6q16 deletions, some data support a contribution of other genes, such as GRIK2, to explain associated behavioural problems. We describe 15 new patients in whom de novo 6q16 deletions were characterised by comparative genomic hybridisation or single-nucleotide polymorphism (SNP) array analysis, including the first patient with fetopathological data. This fetus showed dysmorphic facial features, cerebellar and cerebral migration defects with neuronal heterotopias, and fusion of brain nuclei. The size of the deletion in the 14 living patients ranged from 1.73 to 7.84 Mb, and the fetus had the largest deletion (14 Mb). Genotype-phenotype correlations confirmed the major role for SIM1 haploinsufficiency in obesity and the PWS-like phenotype. Nevertheless, only 8 of 13 patients with SIM1 deletion exhibited obesity, in agreement with incomplete penetrance of SIM1 haploinsufficiency. This study in the largest series reported to date confirms that the PWS-like phenotype is strongly linked to 6q16.2q16.3 deletions and varies considerably in its clinical expression. The possible involvement of other genes in the 6q16.2q16.3-deletion phenotype is discussed.

Indexed as

PenetranceAborted FetusAdolescentAdultBasic Helix-Loop-Helix ProteinsChildChild, PreschoolChromosomes, Human, Pair 6Comparative Genomic HybridizationFemaleGenetic Association StudiesHumansInfantMaleObesityPolymorphism, Single NucleotideBasic Helix-Loop-Helix ProteinsRepressor ProteinsSIM1 protein, human

Identifiers

PMID25351778
PMCPMC4795105
OpenAlexW1972865227

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.