Evidence map›Paper›PMID 25349630›Full record

ArticleGut pathogens2014

Phase-variable restriction/modification systems are required for Helicobacter pylori colonization.

Jonathan C Gauntlett, Hans-Olof Nilsson, Alma Fulurija, Barry J Marshall, Mohammed Benghezal

Open access · goldAbstract read
In one paragraph

Article in Gut pathogens, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 29 citations in OpenAlex.

  1. How to Unmask an Unknown: The Restriction-Modification SystemInternational journal of molecular sciences · 2026
    Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. TheJournal of bacteriology · 2024
    Article
  7. Article
  8. Review
  9. Review
  10. Microorganisms · 2022
    Review
  11. Article
  12. Article
  13. A Bacterial Epigenetic Switch in Non-typeableFrontiers in cellular and infection microbiology · 2020
    Article
  14. Article
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Jonathan C GauntlettOndek Pty Ltd and Helicobacter pylori Research Laboratory, School of Pathology and Laboratory Medicine, Marshall Centre for Infectious Disease Research and Training, University of Western Australia, Nedlands 6009, Western Australia, Australia.
Hans-Olof NilssonOndek Pty Ltd and Helicobacter pylori Research Laboratory, School of Pathology and Laboratory Medicine, Marshall Centre for Infectious Disease Research and Training, University of Western Australia, Nedlands 6009, Western Australia, Australia.
Alma FulurijaOndek Pty Ltd and Helicobacter pylori Research Laboratory, School of Pathology and Laboratory Medicine, Marshall Centre for Infectious Disease Research and Training, University of Western Australia, Nedlands 6009, Western Australia, Australia.
Barry J MarshallOndek Pty Ltd and Helicobacter pylori Research Laboratory, School of Pathology and Laboratory Medicine, Marshall Centre for Infectious Disease Research and Training, University of Western Australia, Nedlands 6009, Western Australia, Australia.
Mohammed BenghezalOndek Pty Ltd and Helicobacter pylori Research Laboratory, School of Pathology and Laboratory Medicine, Marshall Centre for Infectious Disease Research and Training, University of Western Australia, Nedlands 6009, Western Australia, Australia.
University of Western Australia · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundOne mechanism utilized by bacterial pathogens for host adaptation and immune evasion is the generation of phenotypic diversity by the phasevarion that results from the differential expression of a suite of genes regulated by the activity of a phase-variable methyltransferase within a restriction modification (RM) system. Phasevarions are active in Helicobacter pylori, however there have been no studies investigating the significance of phase-variable RM systems on host colonization.

methodsTwo mutant types incapable of phase variation were constructed; a clean deletion mutant ('DEL') and a mutant ('ON') where the homopolymeric repeat was replaced with a non-repeat synonymous sequence, resulting in expression of the full-length protein. The resulting mutants were assessed for their colonisation ability in the mouse model.

resultsFive phase-variable genes encoding either methyltransferases or members of RM systems were found in H. pylori OND79. Our mutants fell into three categories; 1, those with little effect on colonization, 2, those where expression of the full-length protein was detrimental, 3, those where both mutations were detrimental.

conclusionsOur results demonstrated that phase-variable methyltransferases are critical to H. pylori colonization, suggesting that genome methylation and generation of epigenetic diversity is important for colonization and pathogenesis. The third category of mutants suggests that differential genome methylation status of H. pylori cell populations, achieved by the phasevarion, is essential for host adaptation. Studies of phase-variable RM mutants falling in the two other categories, not strictly required for colonization, represent a future perspective to investigate the role of phasevarion in persistence of H. pylori.

Indexed as

Helicobacter pyloriModificationPhase variationPhasevarionRestriction

Identifiers

PMID25349630
PMCPMC4209511
OpenAlexW2171206923

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.