ReviewPlant physiology2014
Insights into conifer giga-genomes.
Open access · greenAbstract readReview
In one paragraph
Review in Plant physiology, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 78 papers.
0numbers the graph read from it
0cells of the map it votes in
78citing papers in PubMed
5.7field-weighted citation impact, top 3% of its field
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
78 citing papers in PubMed, 209 citations in OpenAlex.
- Integrative linkage mapping and transcriptomic profiling uncover ozone-response modules in a peri-urban forest tree.G3 (Bethesda, Md.) · 2026Article
- Article
- Genome-wide association study reveals genomic regions associated withFrontiers in plant science · 2026Article
- Arginine, a key amino acid for nitrogen nutrition and metabolism of forest trees.Journal of experimental botany · 2025Review
- Drought Response and Genetic Variation in Scots Pine Seedlings' Provenances: Insights From High-Throughput Phenotyping for Climate-Resilient Forestry.Evolutionary applications · 2025Article
- gymnotoa-db: a database and application to optimize functional annotation in gymnosperms.Database : the journal of biological databases and curation · 2025Article
- Phased high-quality genome of the gymnosperm Himalayan Yew assists in paclitaxel pathway exploration.GigaScience · 2025Article
- Contrasting levels of transcriptome-wide SNP diversity and adaptive molecular variation among conifers.Frontiers in plant science · 2025Article
- Investigating adaptation to environmental variability in forest trees through molecular phylogenetic analysis.PloS one · 2025Article
- De novo transcriptome assembly and discovery of drought-responsive genes in white spruce (Picea glauca).PloS one · 2025Article
- Transcriptome differentiation in Cryptomeria japonica trees with different origins growing in the north and south of Japan.PloS one · 2025Article
- Article
- Zingiber officinale Ameliorates Acute Toxoplasmosis-Induced Pathology in Mice.Acta parasitologica · 2024Article
- Testing source elevation versus genotype as predictors of sugar pine performance in a post-fire restoration planting.Ecosphere (Washington, D.C) · 2024Article
- Exploring Taxonomic and Genetic Relationships in theInternational journal of molecular sciences · 2024Article
- Conifers Concentrate Large Numbers of NLR Immune Receptor Genes on One Chromosome.Genome biology and evolution · 2024Article
- A genome sequence for the threatened whitebark pine.G3 (Bethesda, Md.) · 2024Article
- Under Stress: Searching for Genes Involved in the Response ofInternational journal of molecular sciences · 2024Article
- Long-insert sequence capture detects high copy numbers in a defence-related beta-glucosidase gene βglu-1 with large variations in white spruce but not Norway spruce.BMC genomics · 2024Article
- Assembly and annotation of the black spruce genome provide insights on spruce phylogeny and evolution of stress response.G3 (Bethesda, Md.) · 2023Article
18 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
14 authors at 5 institutions in 2 countries.
Amanda R De La TorreDepartment of Ecology and Environmental Sciences (A.R.D.L.T., P.K.I.) and Umeå Plant Science Center, Department of Plant Physiology (P.K.I., S.J., O.N., N.S.), Umeå University, SE-901 87 Umea, Sweden;Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia, Canada V5Z 4S6 (I.B., S.J.M.J.);Canada Research Chair in Forest and Environmental Genomics (J.Bou.) and Center for Forest Research and Institute for Systems and Integrative Biology (J.Bou., J.M.), Université Laval, Quebec, Quebec, Canada G1V 0A6;Michael Smith Laboratories (C.I.K., P.Z., J.Boh.) and Department of Forest and Conservation Sciences (K.R., J.Boh.), University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4; andBritish Columbia Ministry of Forests, Lands, and Natural Resource Operations, Victoria, British Columbia, Canada V8W 9C2 (A.Y.).
Inanc BirolDepartment of Ecology and Environmental Sciences (A.R.D.L.T., P.K.I.) and Umeå Plant Science Center, Department of Plant Physiology (P.K.I., S.J., O.N., N.S.), Umeå University, SE-901 87 Umea, Sweden;Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia, Canada V5Z 4S6 (I.B., S.J.M.J.);Canada Research Chair in Forest and Environmental Genomics (J.Bou.) and Center for Forest Research and Institute for Systems and Integrative Biology (J.Bou., J.M.), Université Laval, Quebec, Quebec, Canada G1V 0A6;Michael Smith Laboratories (C.I.K., P.Z., J.Boh.) and Department of Forest and Conservation Sciences (K.R., J.Boh.), University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4; andBritish Columbia Ministry of Forests, Lands, and Natural Resource Operations, Victoria, British Columbia, Canada V8W 9C2 (A.Y.).
Jean BousquetDepartment of Ecology and Environmental Sciences (A.R.D.L.T., P.K.I.) and Umeå Plant Science Center, Department of Plant Physiology (P.K.I., S.J., O.N., N.S.), Umeå University, SE-901 87 Umea, Sweden;Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia, Canada V5Z 4S6 (I.B., S.J.M.J.);Canada Research Chair in Forest and Environmental Genomics (J.Bou.) and Center for Forest Research and Institute for Systems and Integrative Biology (J.Bou., J.M.), Université Laval, Quebec, Quebec, Canada G1V 0A6;Michael Smith Laboratories (C.I.K., P.Z., J.Boh.) and Department of Forest and Conservation Sciences (K.R., J.Boh.), University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4; andBritish Columbia Ministry of Forests, Lands, and Natural Resource Operations, Victoria, British Columbia, Canada V8W 9C2 (A.Y.).
Pär K IngvarssonDepartment of Ecology and Environmental Sciences (A.R.D.L.T., P.K.I.) and Umeå Plant Science Center, Department of Plant Physiology (P.K.I., S.J., O.N., N.S.), Umeå University, SE-901 87 Umea, Sweden;Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia, Canada V5Z 4S6 (I.B., S.J.M.J.);Canada Research Chair in Forest and Environmental Genomics (J.Bou.) and Center for Forest Research and Institute for Systems and Integrative Biology (J.Bou., J.M.), Université Laval, Quebec, Quebec, Canada G1V 0A6;Michael Smith Laboratories (C.I.K., P.Z., J.Boh.) and Department of Forest and Conservation Sciences (K.R., J.Boh.), University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4; andBritish Columbia Ministry of Forests, Lands, and Natural Resource Operations, Victoria, British Columbia, Canada V8W 9C2 (A.Y.).
Stefan JanssonDepartment of Ecology and Environmental Sciences (A.R.D.L.T., P.K.I.) and Umeå Plant Science Center, Department of Plant Physiology (P.K.I., S.J., O.N., N.S.), Umeå University, SE-901 87 Umea, Sweden;Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia, Canada V5Z 4S6 (I.B., S.J.M.J.);Canada Research Chair in Forest and Environmental Genomics (J.Bou.) and Center for Forest Research and Institute for Systems and Integrative Biology (J.Bou., J.M.), Université Laval, Quebec, Quebec, Canada G1V 0A6;Michael Smith Laboratories (C.I.K., P.Z., J.Boh.) and Department of Forest and Conservation Sciences (K.R., J.Boh.), University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4; andBritish Columbia Ministry of Forests, Lands, and Natural Resource Operations, Victoria, British Columbia, Canada V8W 9C2 (A.Y.).
Steven J M JonesDepartment of Ecology and Environmental Sciences (A.R.D.L.T., P.K.I.) and Umeå Plant Science Center, Department of Plant Physiology (P.K.I., S.J., O.N., N.S.), Umeå University, SE-901 87 Umea, Sweden;Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia, Canada V5Z 4S6 (I.B., S.J.M.J.);Canada Research Chair in Forest and Environmental Genomics (J.Bou.) and Center for Forest Research and Institute for Systems and Integrative Biology (J.Bou., J.M.), Université Laval, Quebec, Quebec, Canada G1V 0A6;Michael Smith Laboratories (C.I.K., P.Z., J.Boh.) and Department of Forest and Conservation Sciences (K.R., J.Boh.), University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4; andBritish Columbia Ministry of Forests, Lands, and Natural Resource Operations, Victoria, British Columbia, Canada V8W 9C2 (A.Y.).
Christopher I KeelingDepartment of Ecology and Environmental Sciences (A.R.D.L.T., P.K.I.) and Umeå Plant Science Center, Department of Plant Physiology (P.K.I., S.J., O.N., N.S.), Umeå University, SE-901 87 Umea, Sweden;Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia, Canada V5Z 4S6 (I.B., S.J.M.J.);Canada Research Chair in Forest and Environmental Genomics (J.Bou.) and Center for Forest Research and Institute for Systems and Integrative Biology (J.Bou., J.M.), Université Laval, Quebec, Quebec, Canada G1V 0A6;Michael Smith Laboratories (C.I.K., P.Z., J.Boh.) and Department of Forest and Conservation Sciences (K.R., J.Boh.), University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4; andBritish Columbia Ministry of Forests, Lands, and Natural Resource Operations, Victoria, British Columbia, Canada V8W 9C2 (A.Y.).
John MacKayDepartment of Ecology and Environmental Sciences (A.R.D.L.T., P.K.I.) and Umeå Plant Science Center, Department of Plant Physiology (P.K.I., S.J., O.N., N.S.), Umeå University, SE-901 87 Umea, Sweden;Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia, Canada V5Z 4S6 (I.B., S.J.M.J.);Canada Research Chair in Forest and Environmental Genomics (J.Bou.) and Center for Forest Research and Institute for Systems and Integrative Biology (J.Bou., J.M.), Université Laval, Quebec, Quebec, Canada G1V 0A6;Michael Smith Laboratories (C.I.K., P.Z., J.Boh.) and Department of Forest and Conservation Sciences (K.R., J.Boh.), University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4; andBritish Columbia Ministry of Forests, Lands, and Natural Resource Operations, Victoria, British Columbia, Canada V8W 9C2 (A.Y.).
Ove NilssonDepartment of Ecology and Environmental Sciences (A.R.D.L.T., P.K.I.) and Umeå Plant Science Center, Department of Plant Physiology (P.K.I., S.J., O.N., N.S.), Umeå University, SE-901 87 Umea, Sweden;Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia, Canada V5Z 4S6 (I.B., S.J.M.J.);Canada Research Chair in Forest and Environmental Genomics (J.Bou.) and Center for Forest Research and Institute for Systems and Integrative Biology (J.Bou., J.M.), Université Laval, Quebec, Quebec, Canada G1V 0A6;Michael Smith Laboratories (C.I.K., P.Z., J.Boh.) and Department of Forest and Conservation Sciences (K.R., J.Boh.), University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4; andBritish Columbia Ministry of Forests, Lands, and Natural Resource Operations, Victoria, British Columbia, Canada V8W 9C2 (A.Y.).
Kermit RitlandDepartment of Ecology and Environmental Sciences (A.R.D.L.T., P.K.I.) and Umeå Plant Science Center, Department of Plant Physiology (P.K.I., S.J., O.N., N.S.), Umeå University, SE-901 87 Umea, Sweden;Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia, Canada V5Z 4S6 (I.B., S.J.M.J.);Canada Research Chair in Forest and Environmental Genomics (J.Bou.) and Center for Forest Research and Institute for Systems and Integrative Biology (J.Bou., J.M.), Université Laval, Quebec, Quebec, Canada G1V 0A6;Michael Smith Laboratories (C.I.K., P.Z., J.Boh.) and Department of Forest and Conservation Sciences (K.R., J.Boh.), University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4; andBritish Columbia Ministry of Forests, Lands, and Natural Resource Operations, Victoria, British Columbia, Canada V8W 9C2 (A.Y.).
Nathaniel StreetDepartment of Ecology and Environmental Sciences (A.R.D.L.T., P.K.I.) and Umeå Plant Science Center, Department of Plant Physiology (P.K.I., S.J., O.N., N.S.), Umeå University, SE-901 87 Umea, Sweden;Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia, Canada V5Z 4S6 (I.B., S.J.M.J.);Canada Research Chair in Forest and Environmental Genomics (J.Bou.) and Center for Forest Research and Institute for Systems and Integrative Biology (J.Bou., J.M.), Université Laval, Quebec, Quebec, Canada G1V 0A6;Michael Smith Laboratories (C.I.K., P.Z., J.Boh.) and Department of Forest and Conservation Sciences (K.R., J.Boh.), University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4; andBritish Columbia Ministry of Forests, Lands, and Natural Resource Operations, Victoria, British Columbia, Canada V8W 9C2 (A.Y.).
Alvin YanchukDepartment of Ecology and Environmental Sciences (A.R.D.L.T., P.K.I.) and Umeå Plant Science Center, Department of Plant Physiology (P.K.I., S.J., O.N., N.S.), Umeå University, SE-901 87 Umea, Sweden;Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia, Canada V5Z 4S6 (I.B., S.J.M.J.);Canada Research Chair in Forest and Environmental Genomics (J.Bou.) and Center for Forest Research and Institute for Systems and Integrative Biology (J.Bou., J.M.), Université Laval, Quebec, Quebec, Canada G1V 0A6;Michael Smith Laboratories (C.I.K., P.Z., J.Boh.) and Department of Forest and Conservation Sciences (K.R., J.Boh.), University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4; andBritish Columbia Ministry of Forests, Lands, and Natural Resource Operations, Victoria, British Columbia, Canada V8W 9C2 (A.Y.).
Philipp ZerbeDepartment of Ecology and Environmental Sciences (A.R.D.L.T., P.K.I.) and Umeå Plant Science Center, Department of Plant Physiology (P.K.I., S.J., O.N., N.S.), Umeå University, SE-901 87 Umea, Sweden;Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia, Canada V5Z 4S6 (I.B., S.J.M.J.);Canada Research Chair in Forest and Environmental Genomics (J.Bou.) and Center for Forest Research and Institute for Systems and Integrative Biology (J.Bou., J.M.), Université Laval, Quebec, Quebec, Canada G1V 0A6;Michael Smith Laboratories (C.I.K., P.Z., J.Boh.) and Department of Forest and Conservation Sciences (K.R., J.Boh.), University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4; andBritish Columbia Ministry of Forests, Lands, and Natural Resource Operations, Victoria, British Columbia, Canada V8W 9C2 (A.Y.).
Jörg BohlmannDepartment of Ecology and Environmental Sciences (A.R.D.L.T., P.K.I.) and Umeå Plant Science Center, Department of Plant Physiology (P.K.I., S.J., O.N., N.S.), Umeå University, SE-901 87 Umea, Sweden;Genome Sciences Centre, British Columbia Cancer Agency, Vancouver, British Columbia, Canada V5Z 4S6 (I.B., S.J.M.J.);Canada Research Chair in Forest and Environmental Genomics (J.Bou.) and Center for Forest Research and Institute for Systems and Integrative Biology (J.Bou., J.M.), Université Laval, Quebec, Quebec, Canada G1V 0A6;Michael Smith Laboratories (C.I.K., P.Z., J.Boh.) and Department of Forest and Conservation Sciences (K.R., J.Boh.), University of British Columbia, Vancouver, British Columbia, Canada V6T 1Z4; andBritish Columbia Ministry of Forests, Lands, and Natural Resource Operations, Victoria, British Columbia, Canada V8W 9C2 (A.Y.) bohlmann@msl.ubc.ca.
Umeå University · SEUniversity of British Columbia · CAUniversité Laval · CAGenome British Columbia · CAMinistry of Forests · CA
Funding
No grant is acknowledged in the PubMed record.
Abstract
Insights from sequenced genomes of major land plant lineages have advanced research in almost every aspect of plant biology. Until recently, however, assembled genome sequences of gymnosperms have been missing from this picture. Conifers of the pine family (Pinaceae) are a group of gymnosperms that dominate large parts of the world's forests. Despite their ecological and economic importance, conifers seemed long out of reach for complete genome sequencing, due in part to their enormous genome size (20-30 Gb) and the highly repetitive nature of their genomes. Technological advances in genome sequencing and assembly enabled the recent publication of three conifer genomes: white spruce (Picea glauca), Norway spruce (Picea abies), and loblolly pine (Pinus taeda). These genome sequences revealed distinctive features compared with other plant genomes and may represent a window into the past of seed plant genomes. This Update highlights recent advances, remaining challenges, and opportunities in light of the publication of the first conifer and gymnosperm genomes.
Indexed as
ForestsGenome, PlantPiceaPinusTracheophyta
Identifiers
What OpenQuestion holds
Textmetadata
Read underepoch 390
Registered trials
None linked
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.