Evidence map›Paper›PMID 25349203›Full record

ArticleJournal of the American Society of Nephrology : JASN2015

HLA-DQA1 and PLCG2 Are Candidate Risk Loci for Childhood-Onset Steroid-Sensitive Nephrotic Syndrome.

Rasheed A Gbadegesin, Adebowale Adeyemo, Nicholas J A Webb, Larry A Greenbaum, Asiri Abeyagunawardena, Shenal Thalgahagoda, Arundhati Kale, Debbie Gipson, Tarak Srivastava, Jen-Jar Lin and 26 more

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Society of Nephrology : JASN, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed, 4 pooled it
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 4 syntheses or guidelines pooled it, 147 citations in OpenAlex.

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29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

36 authors at 20 institutions in 6 countries.

Rasheed A GbadegesinDepartment of Pediatrics, Division of Nephrology and Center for Human Genetics, Duke University Medical Center, Durham, North Carolina;
Adebowale AdeyemoCenter for Research on Genomics and Global Health, National Human Genome Research Institute, National Institutes of Health, Bethesda, Maryland; rasheed.gbadegesin@duke.edu adeyemoa@mail.nih.gov.
Nicholas J A WebbDepartment of Pediatric Nephrology and NIHR/Wellcome Trust Children's Clinical Research Facility, The University of Manchester, Manchester Academic Health Science Centre, Royal Manchester Children's Hospital, Manchester, United Kingdom;
Larry A GreenbaumDivision of Pediatric Nephrology, Emory University School of Medicine and Children's Healthcare of Atlanta, Georgia;
Asiri AbeyagunawardenaDepartment of Pediatrics, University of Peradeniya, Peradeniya, Sri Lanka;
Shenal ThalgahagodaDepartment of Pediatrics, University of Peradeniya, Peradeniya, Sri Lanka;
Arundhati KaleDivision of Nephrology, Baylor College of Medicine and Texas Children's Hospital, Houston, Texas;
Debbie GipsonDepartment of Pediatrics, Division of Nephrology, University of Michigan, Ann Arbor, Michigan;
Tarak SrivastavaDivision of Nephrology, Children's Mercy Hospital, Kansas City, Missouri;
Jen-Jar LinDepartment of Pediatrics, Division of Nephrology, Wake Forest University Baptist Medical Center, Winston-Salem, North Carolina;
Deepa ChandDepartment of Pediatrics, Division of Nephrology, Rush University, Chicago, Illinois;
Tracy E HunleyDepartment of Pediatrics, Division of Nephrology, Vanderbilt University, Nashville, Tennessee;
Patrick D BrophyDepartment of Pediatrics, Division of Nephrology, University of Iowa, Iowa City, Iowa;
Arvind BaggaDepartment of Pediatrics, Division of Nephrology, All India Institute of Medical Science, Ansari Nagar, New Delhi, India;
Aditi SinhaDepartment of Pediatrics, Division of Nephrology, All India Institute of Medical Science, Ansari Nagar, New Delhi, India;
Michelle N RheaultDepartment of Pediatrics, Division of Nephrology, University of Minnesota Amplatz Children's Hospital, Minneapolis, Minnesota;
Joanna GhaliDepartment of Nephrology, Royal Melbourne Hospital, Parkville, Australia;
Kathy NichollsDepartment of Nephrology, Royal Melbourne Hospital, Parkville, Australia;
Elizabeth AbrahamDepartment of Pediatrics, Division of Nephrology, St. Louis University, St. Louis, Missouri;
Halima S JanjuaPediatric Institute, Center for Pediatric Nephrology, Cleveland Clinic, Cleveland, Ohio;
Abiodun OmolojaDivision of Nephrology, Dayton Children's Hospital, Dayton, Ohio;
Gina-Marie BarlettaDivision of Nephrology, Phoenix Children's Hospital, Phoenix, Arizona;
Yi CaiDivision of Nephrology, Helen Devos Children's Hospital, Grand Rapids, Michigan;
David D MilfordBirmingham Children's Hospital, Birmingham, United Kingdom;
Catherine O'BrienBirmingham Children's Hospital, Birmingham, United Kingdom;
Atif AwanDivision of Nephrology, The Children's University Hospital, Dublin, Ireland;
Vladimir BelostotskyDepartment of Pediatrics, Division of Nephrology, Leeds Teaching Hospital, Leeds, United Kingdom;
William E SmoyerCenter for Clinical and Translational Research, Research Institute at Nationwide Children's Hospital, Columbus, Ohio; and.
Alison HomstadDepartment of Pediatrics, Division of Nephrology and Center for Human Genetics, Duke University Medical Center, Durham, North Carolina;
Gentzon HallDepartment of Medicine, Division of Nephrology and Center for Human Genetics, Duke University Medical Center, Durham, North Carolina.
Guanghong WuDepartment of Medicine, Division of Nephrology and Center for Human Genetics, Duke University Medical Center, Durham, North Carolina.
Shashi NagarajDepartment of Pediatrics, Division of Nephrology and Center for Human Genetics, Duke University Medical Center, Durham, North Carolina;
Delbert WigfallDepartment of Pediatrics, Division of Nephrology and Center for Human Genetics, Duke University Medical Center, Durham, North Carolina;
John ForemanDepartment of Pediatrics, Division of Nephrology and Center for Human Genetics, Duke University Medical Center, Durham, North Carolina;
Michelle P WinnDepartment of Medicine, Division of Nephrology and Center for Human Genetics, Duke University Medical Center, Durham, North Carolina.
Mid-West Pediatric Nephrology Consortium
Center for Human Genetics · USDuke University Hospital · USAll India Institute of Medical Sciences · INBirmingham Children's Hospital · GBDuke Medical Center · USThe Royal Melbourne Hospital · AUUniversity of Peradeniya · LKAtrium Health Wake Forest Baptist · USChildren's Healthcare of Atlanta · USChildren's Mercy Hospital · USCleveland Clinic · USDayton Children's Hospital · USHelen DeVos Children's Hospital · USLeeds Teaching Hospitals NHS Trust · GBManchester Academic Health Science Centre · GBNational Human Genome Research Institute · USNationwide Children's Hospital · USPhoenix Children's Hospital · USRush University · USSaint Louis University · US

Funding

LCenter for Clinical and Translational Science and TrainingUL1TR001425 · NCATS · UNIVERSITY OF CINCINNATI · PI HEUBI, JAMES E., KISSELA, BRETT M · 2015 to 2024
$37.5M
Cincinnati Center for Clinical and Translational Sciences and TrainingUL1TR000077 · NCATS · UNIVERSITY OF CINCINNATI · PI HEUBI, JAMES E., TSEVAT, JOEL · 2012 to 2014
$9.9M
Renal Genomics CoreP30DK096493 · NIDDK · DUKE UNIVERSITY · PI FOSTER, MARY H., SVETKEY, LAURA P · 2012 to 2016
$5.9M
Genetic epidemiology of complex diseasesZ01HG200362 · NHGRI · NATIONAL HUMAN GENOME RESEARCH INSTITUTE · PI ROTIMI, CHARLES · 2008 to 2008
$1.7M
A New Locus for Hereditary FSGS on Chromosome 2pK08DK082495 · NIDDK · DUKE UNIVERSITY · PI GBADEGESIN, RASHEED ADEBAYO · 2009 to 2013
$665k
Intramural NIH HHS Z01 HG200362NCATS NIH HHS UL1 TR000077NCATS NIH HHS UL1 TR001425NHGRI NIH HHS Z01-HG200362NIDDK NIH HHS K08 DK082495NIDDK NIH HHS P30 DK096493NIDDK NIH HHS P30-DK096493
6 · The paper itself

Abstract

Steroid-sensitive nephrotic syndrome (SSNS) accounts for >80% of cases of nephrotic syndrome in childhood. However, the etiology and pathogenesis of SSNS remain obscure. Hypothesizing that coding variation may underlie SSNS risk, we conducted an exome array association study of SSNS. We enrolled a discovery set of 363 persons (214 South Asian children with SSNS and 149 controls) and genotyped them using the Illumina HumanExome Beadchip. Four common single nucleotide polymorphisms (SNPs) in HLA-DQA1 and HLA-DQB1 (rs1129740, rs9273349, rs1071630, and rs1140343) were significantly associated with SSNS at or near the Bonferroni-adjusted P value for the number of single variants that were tested (odds ratio, 2.11; 95% confidence interval, 1.56 to 2.86; P=1.68×10(-6) (Fisher exact test). Two of these SNPs-the missense variants C34Y (rs1129740) and F41S (rs1071630) in HLA-DQA1-were replicated in an independent cohort of children of white European ancestry with SSNS (100 cases and ≤589 controls; P=1.42×10(-17)). In the rare variant gene set-based analysis, the best signal was found in PLCG2 (P=7.825×10(-5)). In conclusion, this exome array study identified HLA-DQA1 and PLCG2 missense coding variants as candidate loci for SSNS. The finding of a MHC class II locus underlying SSNS risk suggests a major role for immune response in the pathogenesis of SSNS.

Indexed as

Age DistributionAge of OnsetAllelesCase-Control StudiesChildChild, PreschoolCohort StudiesFemaleGenetic Predisposition to DiseaseGenotypeHLA-DQ alpha-ChainsHumansIncidenceMaleMutation, MissenseNephrotic SyndromeHLA-DQA1 antigenHLA-DQ alpha-ChainsPhospholipase C gammaSteroidschildrengenetic renal diseaseglomerular diseasenephrotic syndrome

Identifiers

PMID25349203
PMCPMC4483579
OpenAlexW2129903993

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.