Evidence map›Paper›PMID 25347729›Full record

ArticleBiochemistry2014

Structural changes in the oxygen-evolving complex of photosystem II induced by the S1 to S2 transition: A combined XRD and QM/MM study.

Mikhail Askerka, Jimin Wang, Gary W Brudvig, Victor S Batista

Abstract read
In one paragraph

Article in Biochemistry, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Article
  5. High-resolution cryo-electron microscopy structure of photosystem II from the mesophilic cyanobacterium,Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  6. Relative stability of the SPhotosynthesis research · 2019
    Article
  7. Article
  8. Review
  9. Identifying carboxylate ligand vibrational modes in photosystem II with QM/MM methods.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  10. Quantum mechanics/molecular mechanics simulation of the ligand vibrations of the water-oxidizing MnProceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  11. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Mikhail AskerkaDepartment of Chemistry, Yale University , New Haven, Connecticut 06520-8107, United States.
Jimin Wang
Gary W Brudvig
Victor S Batista

Funding

X-RAY ANALYSIS OF PROTEIN STRUCTURE AND FUNCTIONP01GM022778 · NIGMS · YALE UNIVERSITY · PI BREAKER, RONALD R · 1985 to 2019
$26.1M
NIGMS NIH HHS P01 GM022778
6 · The paper itself

Abstract

The S1 → S2 transition of the oxygen-evolving complex (OEC) of photosystem II does not involve the transfer of a proton to the lumen and occurs at cryogenic temperatures. Therefore, it is commonly thought to involve only Mn oxidation without any significant change in the structure of the OEC. Here, we analyze structural changes upon the S1 → S2 transition, as revealed by quantum mechanics/molecular mechanics methods and the isomorphous difference Fourier method applied to serial femtosecond X-ray diffraction data. We find that the main structural change in the OEC is in the position of the dangling Mn and its coordination environment.

Indexed as

Coordination ComplexesCrystallography, X-RayFourier AnalysisManganeseModels, MolecularOxidation-ReductionOxygenPhotosystem II Protein ComplexProtein Structure, TertiaryQuantum TheorySpectroscopy, Fourier Transform InfraredCoordination ComplexesManganeseOxygenPhotosystem II Protein Complex

Identifiers

PMID25347729
PMCPMC4230327

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.