Evidence map›Paper›PMID 25346544›Full record

ArticleIEEE transactions on automatic control2014

Intercellular delay regulates the collective period of repressively coupled gene regulatory oscillator networks.

Yongqiang Wang, Yutaka Hori, Shinji Hara, Francis J Doyle

Abstract read
In one paragraph

Article in IEEE transactions on automatic control, 2014. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Yongqiang WangDepartment of Chemical Engineering, University of California, Santa Barbara, California 93106-5080 USA. wyqthu@gmail.com .
Yutaka HoriDepartment of Information Physics and Computing, The University of Tokyo, Tokyo 113-8656 Japan. Yutaka_hori@ipc.i.u-tokyo.ac.jp .
Shinji HaraDepartment of Information Physics and Computing, The University of Tokyo, Tokyo 113-8656 Japan. Shinji_hara@ipc.i.u-tokyo.ac.jp .
Francis J DoyleDepartment of Chemical Engineering, University of California, Santa Barbara, California 93106-5080 USA. frank.doyle@icb.ucsb.edu .

Funding

MECHANISMS AND MODELING OF NETWORKED CIRCADIAN PACEMAKER SYNCHRONIZATIONR01GM096873 · NIGMS · WASHINGTON UNIVERSITY · PI DOYLE, FRANCIS J, HENSON, MICHAEL · 2011 to 2014
$1.1M
NIGMS NIH HHS R01 GM096873
6 · The paper itself

Abstract

Most biological rhythms are generated by a population of cellular oscillators coupled through intercellular signaling. Recent experimental evidence shows that the collective period may differ significantly from the autonomous period in the presence of intercellular delays. The phenomenon has been investigated using delay-coupled phase oscillators, but the proposed phase model contains no direct biological mechanism, which may weaken the model's reliability in unraveling biophysical principles. Based on a published gene regulatory oscillator model, we analyze the collective period of delay-coupled biological oscillators using the multivariable harmonic balance technique. We prove that, in contradiction to the common intuition that the collective period increases linearly with the coupling delay, the collective period turns out to be a periodic function of the intercellular delay. More surprisingly, the collective period may even decrease with the intercellular delay when the delay resides in certain regions. The collective period is given in a closed-form in terms of biochemical reaction constants and thus provides biological insights as well as guidance in synthetic-biological-oscillator design. Simulation results are given based on a segmentation clock model to confirm the theoretical predictions.

Identifiers

PMID25346544
PMCPMC4207127

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.