Evidence map›Paper›PMID 25345685›Full record

ArticleStatistics in medicine2015

A PRIM approach to predictive-signature development for patient stratification.

Gong Chen, Hua Zhong, Anton Belousov, Viswanath Devanarayan

Abstract read
In one paragraph

Article in Statistics in medicine, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Trial
  3. Article
  4. Review
  5. A reference-free R-learner for treatment recommendation.Statistical methods in medical research · 2023
    Article
  6. Article
  7. Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Gong ChenRoche Pharmaceutical Research and Early Development, Pharmaceutical Sciences, Roche Innovation Center New York, Roche TCRC, Inc., 430 East 29th Street, New York, NY 10016, U.S.A.
Hua Zhong
Anton Belousov
Viswanath Devanarayan

Funding

Vaccine FacilityP30CA016087 · NCI · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ADRIANA HEGUY · 1985 to 2026
$83.1M
Network based biosignature developmentR21GM110450 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI ZHONG, HUA JUDY · 2014 to 2014
$167k
NCI NIH HHS P30 CA016087NIGMS NIH HHS 1R21 GM110450-01NIGMS NIH HHS R21 GM110450
6 · The paper itself

Abstract

Patients often respond differently to a treatment because of individual heterogeneity. Failures of clinical trials can be substantially reduced if, prior to an investigational treatment, patients are stratified into responders and nonresponders based on biological or demographic characteristics. These characteristics are captured by a predictive signature. In this paper, we propose a procedure to search for predictive signatures based on the approach of patient rule induction method. Specifically, we discuss selection of a proper objective function for the search, present its algorithm, and describe a resampling scheme that can enhance search performance. Through simulations, we characterize conditions under which the procedure works well. To demonstrate practical uses of the procedure, we apply it to two real-world data sets. We also compare the results with those obtained from a recent regression-based approach, Adaptive Index Models, and discuss their respective advantages. In this study, we focus on oncology applications with survival responses.

Indexed as

Patient SelectionPredictive Value of TestsAntineoplastic AgentsBiomarkersBreast NeoplasmsClinical Trials as TopicComputer SimulationDisease-Free SurvivalDrug Therapy, CombinationEstrogen AntagonistsFemaleGene ExpressionHumansLymphoma, Large B-Cell, DiffuseMicroarray AnalysisNeoplasmsAntineoplastic AgentsBiomarkersEstrogen AntagonistsReceptors, EstrogenTamoxifenbiomarkerpatient rule induction method (PRIM)patient stratificationpredictive signaturesubgroup analysis

Identifiers

PMID25345685
PMCPMC4285951

What OpenQuestion holds

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LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.